eISSN: 2221-6197 DOI: 10.31301/2221-6197

Thermostable DNA polymerases in the pre-PCR era and at its very beginning

Year: 2026

Pages: 130-135

Number: Volume 18, issue 2

Type: scientific article

Summary:

For the first time, a thermostable DNA polymerase from the thermophilic bacterium Thermus aquaticus was isolated in 1976, but its use in PCR began only more than ten years later, despite the fact that PCR itself had been developed a couple of years earlier. By the time this enzyme began to be used in PCR instead of the Klenow fragment of E.coli DNA polymerase I, DNA polymerases from related eubacteria T. thermophilus, T. flavus, and T. ruber, as well as DNA polymerases from thermophilic archaea Sulfolobus acidocaldarius, S. solfataricus, and Methanobacterium thermoautotrophicum, were already known, in addition to Taq-polymerase. However, many years passed before some of them were used in PCR.

Keywords:

DNA polymerase, Klenow fragment of DNA polymerase I E. coli, thermostable DNA polymerase, DNA, PCR, Thermus aquaticus

References:

    1. Braithwaite DK, Ito J. Compilation, alignment, and phylogenetic relationships of DNA polymerases. Nucleic Acids Res. 1993. 21(4). 787-802. doi: 10.1093/nar/21.4.787
    2. Bollum FJ. Calf thymus polymerase. J Biol Chem. 1960. 235. 2399-2403. doi: 10.1016/S0021-9258(18)64634-4
    3. Brock TD. The value of basic research: discovery of Thermus aquaticus and other extreme thermophiles. Genetics. 1997. 146(4). 1207-1210. doi: 10.1093/genetics/146.4.1207
    4. Brock TD, Freeze H. Thermus aquaticus n. and sp. n., a nonsporulating extreme thermophile. J Bacteriol. 1969. 98(1). 289-297. doi: 10.1128/jb.98.1.289-297.1969
    5. Chien A, Edgar DB, Trela JM. Deoxyribonucleic acid polymerase from the extreme thermophile Thermus aquaticus. J Bacteriol. 1976. 127(3). 1550-1557. doi: 10.1128/jb.127.3.1550-1557.1976
    6. Freeze H, Brock TD. Thermostable aldolase from Thermus aquaticus. J Bacteriol. 1970. 101(2). 541-550. doi: 10.1128/jb.101.2.541-550.1970
    7. Fuller CW. Cycle sequencing with non-thermostable DNA polymerase. US Patent 5,432,065, Jul. 11, 1995
    8. Garafutdinov RR, Baymiev AnK., Sahabutdinova AR et al. DNA-dependent DNA polymerases. Biomics. 2026. 18(1). 120-129. DOI: 10.31301/2221-6197.bmcs.2026-9 (In Russian)
    9. Ito J, Braithwaite DK. Compilation and alignment of DNA polymerase sequences. Nucleic Acids Res. 1991. 19(15). 4045-4057. doi: 10.1093/nar/19.15.4045
    10. Joyce CM, Grindley ND. Construction of a plasmid that overproduces the large proteolytic fragment (Klenow fragment) of DNA polymerase I of Escherichia coli. Proc Natl Acad Sci USA. 1983. 80(7). 1830-1834. doi: 10.1073/pnas.80.7.1830
    11. Kaledin AS, Slyusarenko AG, Gorodetskyj SI. Isolation and properties of DNA polymerase from extremal thermophylic bacteria Thermus aquaticus Biochemistry (Moscow). 1980. 45(4). 644-651. (In Russian)
    12. Kaledin AS, Slyusarenko AG, Gorodetskyj SI. Isolation and properties of DNA polymerase from extremal thermophylic bacteria Thermus flavus. Biochemistry (Moscow). 46(9). 1576-1581. (In Russian)
    13. Kaledin AS, Slyusarenko AG, Gorodetskyj SI. Isolation and properties of DNA-polymerase from extremal thermophylic bacteria Thermus ruber. Biochemistry (Moscow). 47(11). 1785-1791. (In Russian)
    14. Klimczak LJ, Grummt F, Burger KJ. Purification and characterization of DNA polymerase from the archaebacterium Sulfolobus acidocaldarius. Nucleic Acids Res. 13(14). 5269-5282. doi: 10.1093/nar/13.14.5269
    15. Kogan SC, Doherty M, Gitschier J. An improved method for prenatal diagnosis of genetic diseases by analysis of amplified DNA sequences. Application to hemophilia A. New Engl. J. Med. 1987. 317(16). 985-990. doi: 10.1056/NEJM198710153171603
    16. Prangishvili DA. DNA-dependent DNA polymerases of thermoacidophilic archaebacterium Sulfolobus acidocaldarius. Biol. (Moscow). 1985. 19(2). 477-488. (In Russian)
    17. Rüttimann C, Cotorás M, Zaldívar J et al. DNA polymerases from the extremely thermophilic bacterium Thermus thermophilus HB-8. Eur J Biochem. 1985. 149(1). 41-46. doi: 10.1111/j.1432-1033.1985.tb08890.x
    18. Saiki RK, Gelfand DH, Stoffel S et al. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science. 1988. 239(4839). 487-491. doi: 10.1126/science.2448875
    19. Saiki RK, Scharf S, Faloona F et al. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science. 1985. 230(4732). 1350-1354. doi: 10.1126/science.2999980
    20. Stenesh J, McGowan GR. DNA polymerase from mesophilic and thermophilic bacteria. III. Lack of fidelity in the replication of synthetic polydeoxyribonucleotides by DNA polymerase from Bacillus licheniformis and Bacillus Biochim Biophys Acta. 1977. 475(1). 32-41. doi: 10.1016/0005-2787(77)90336-7
    21. Stenesh J, Roe BA. DNA polymerase from mesophilic and thermophilic bacteria: I. Purification and properties of DNA polymerase from Bacillus licheniformis and Bacillus stearothermophilus. Biophys. Acta. 1972. 272(2). 156-166. doi: 10.1016/0005-2787(72)90240-7
    22. Stenesh J, Roe BA. DNA polymerase from mesophilic and thermophilic bacteria: II. Temperature dependence of nearest neighbor frequencies of the product from the DNA polymerase reaction. Biophys. Acta. 1972. 272(2). 167-178. doi: 10.1016/0005-2787(72)90241-9
Download pdf
up
eISSN: 2221-6197 DOI: 10.31301/2221-6197