eISSN: 2221-6197 DOI: 10.31301/2221-6197

Analysis of polymorphism in the genes controlling nitrogen fixation and nodulation for studying the evolution of goat’s rue rhizobia (Neorhizobium galegae)

Year: 2018

Pages: 327-331

Number: Volume 10, issue 4

Type: scientific article

Summary:

The goat’s rue rhizobia (Neorhizobium galegae) represent a convenient model for studying the evolution and speciation in symbiotic bacteria. This rhizobia species is composed of two biovars (bv. orientalis, bv. officinalis) forming N2-fixing nodules with different species of goat’s rue (Galega orientalis, G. officinalis) whereas the cross inoculation between these legume plants leads to the formation of nodules that are devoid of nitrogenase activity. We studied the nucleotide polymorphism of 11 strains of N. galegae isolated from the North Caucasus ecosystems, where G. orientalis has a much higher diversity than G. officinalis. At the same time, differences in the level of polymorphism are higher for sym-genes than for functionally more heterogeneous "non-symbiotic" genes, which may be due to the multidirectional selection induced by host plants in the analyzed nod- and nif/fix-genes. The divergence between bv. orientalis and bv. officinalis for nif/fix-genes is more pronounced than in nod-genes and in "non-symbiotic" genes, indicating the key role of host-specific N2-fixation in the evolution of N. galegae.

 

Keywords:

nodule bacteria; Neorhizobium galegae (bv. orientalis, bv. officinalis); nucleotide polymorphizm; divergent evolution; core and accessor parts of genome

References:

  1. Andronov E.E., Igolkina A.A., Kimeklis A.K., Vorobyov N.I., Provorov N.A. Kharakteristika estestvennogo otbora v populyaciyah kluben'kovyh bakterij (Rhizobium leguminosarum), vzaimodeystvuyushchikh s razlichnymi vidami rasteniy-hozyaev." Genetics. 2015. P. 51, No. 10, p. 1108-1116 (in Russian) [Characteristic of natural selection in populations of nodule bacteria (Rhizobium leguminosarum) interacting with different species of host plants]
  2. Andronov E.E., Terefework Z., Roumiantseva M.L., Dzyubenko N.I., Onichtchouk O.P., Kurchak O.N., Dresler-Nurmi A., Young J.P.W., Simarov B.V., Lindström K. Symbiotic and genetic diversity of Rhizobium galegae isolates collected from the Galega orientalis gene center in the Caucasus. Applied and Environmental Microbiology. 2003. V. 69, P. 1067-1074. doi: 10.1128/AEM.69.2.1067-1074.2003
  3. Kumar N., Lad G., Giuntini E., Kaye M.E., Udomwong P., Shamsani N.J., Young J.P.W., Bailly X. Bacterial genospecies that are not ecologically coherent: population genomics of Rhizobium leguminosarum. Open Biol. 2015.V. 5:140133. doi: 10.1098/rsob.140133
  4. Osterman J., Chizhevskaya E.P., Andronov E.E., Fewer D.P., Terefework Z., Roumiantseva M.L., Onichtchouk O.P., Dresler-Nurmi A., Simarov B.V., Dzyubenko N.I., Lindström K. Galega orientalis is more diverse than Galega officinalis in Caucasus—whole-genome AFLP analysis and phylogenetics of symbiosis-related genes. Molecular Ecology. 2011. V.20. P. 4808-4821. doi: 10.1111/j.1365-294X.2011.05291.x
  5. Provorov N.A., Tikhonovich I., Andronov E. et al. Geneticheskie osnovy evolutsii bacteriy – simbiontov rasteniy. SPb: izd-vo Inform-Navigator, 2016. (in Russian) [Genetic bases of the evolution of bacteria - plant symbionts]
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eISSN: 2221-6197 DOI: 10.31301/2221-6197