eISSN: 2221-6197 DOI: 10.31301/2221-6197

Experssion vectors for editing kafirin (k1C5, gKAF1) and AMEIOTIC 1 genes in sorghum by agrobacterial transformation

Year: 2020

Pages: 520-531

Number: Volume 12, issue 4

Summary:

One of the effective approaches to improve the nutritional value of sorghum grains is the production of mutants with partially or completely blocked synthesis or the altered amino acid composition of seed storage proteins - kafirins. The usage of the genomic editing method allows to solve this problem by introducing mutations into the nucleotide sequences of the genes encoding α- and γ-kafirins (k1C5 and gKAF1). Another important area in the genetics and selection of agricultural plants is the development and use of apomixis technologies to fix heterosis in F1 hybrids. The DYAD arabidopsis gene and its homolog AMEIOTIC 1 are the potential apomixis candidate genes involved in the normal course of meiosis, the induction mutations in which is one of the way to solve this problem. In the course of research, the genomic targets (20 bp sequences) were selected to introduce mutations into the genes of α- and γ-kafirins of sorghum and AMEIOTIC 1 gene through CRISPR/Cas genomic editing technology. Guide RNA design was performed using bioinformatic programs CRISPROR and CHOPCHOP. Cloning of the α- and γ- kafirins and AMEIOTIC 1 targets of sorghum into vector pBAtC was carried out at sites AarI. Validation of the success of target cloning was performed by DNA sequencing. The created constructions were transferred by electroporation to the agrobacterial strain AGL0. Currently, the created vectors are used for the agrobacterial transformation of sorghum plants.

Keywords:

CRISPR, genomic editing, α-kafirin, γ-kafirin, AMEIOTIC 1, pBAtC vector, DNA sequencing, sorghum

References:

  1. Bean S.R., Ioerger B.P., Wilson J.D. et al. (2018) Structure and chemistry of sorghum grain // In: W Rooney (ed.). Achieving sustainable cultivation of sorghum. Vol. 2: Sorghum utilization around the world. Cambridge, UK: Burleigh Dodds Science Publishing. p. 1-27.
  2. Belton PS, Delgadillo I, Halford NG, Shewry PR (2006) Kafirin structure and functionality. Cereal Sci. 44: 272–286. DOI: 10.1016/j.jcs.2006.05.004
  3. Chemeris D.A., Kiryanova O.Yu., Gerashchenkov G.A., Kuluev B.R., Rozhnova N.A., Matniyazov R.T., Baymiev An.Kh., Baymiev Al.Kh., Gubaidullin I.M., Chemeris A.V. Bioinformatic resources for CRISPR/Cas genome editing. Biomics. 2017. V.9(3). P. 203-228. (In Russian)
  4. da Silva L.S., Taylor J., Taylor J.R. Transgenic sorghum with altered kafirin synthesis: kafirin solubility, polymerization, and protein digestion. Agric. Food Chem. 2011. V.59. P.9265–9270. DOI: 10.1021/jf201878p
  5. da Silva L.S., Jung R., Zhao Z., Glassman K., Taylor J., Taylor J.R.N. Effect of suppressing the synthesis of different kafirin subclasses on grain endosperm texture, protein body structure and protein nutritional quality in improved sorghum lines. Cereal Sci. 2011a. V. 54. P. 160–167. doi: 10.1016/j.jcs.2011.04.009
  6. Elkonin L.A., Italianskaya J.V., Domanina I.V., Selivanov N.Yu., Rakitin A.L., Ravin N.V. Transgenic Sorghum with Improved Digestibility of Storage Proteins Obtained by Agrobacterium-mediated Transformation. Russ J. Plant Physiol. V. 63(5). P. 678-689. DOI: 10.1134/S1021443716050046
  7. Elkonin L.A., Panin V.M., Kenzhegulov O.A., Gerashchenkov G.A. Improvement of grain sorghum nutritive properties using modern genetic and biotechnological methods. Plant Biotechnology and Breeding. V.2(3). P.41-48. DOI: 10.30901/2658-6266-2019-3-o6 (In Russian)
  8. Gerashchenkov G. A., Rozhnova N. A., Kuluev B. R., Kiryanova O. Yu., Gumerova G. R., Knyazev A. V., Vershinina Z. R., Mikhailova E. V., Chemeris D. A., Matniyazov R. T., Baimiev An. Kh., Gubaidullin I. M., Baimiev Al. Kh., and Chemeris A. V. Design of Guide RNA for CRISPR/Cas Plant Genome Editing. Russian Journal of Molecular Biology. V. 54, No. 1, P. 24–42. doi: 10.1134/S0026893320010069
  9. Green, M. and Sambrook, J. Molecular Cloning: A Laboratory Manual. 4th Edition, 2012. V. II, Cold Spring Harbor Laboratory Press, New York.
  10. Henley E.C., Taylor J.R.N., Obukosia S.D. (2010) The Importance of Dietary Protein in Human Health: Combating Protein Deficiency in Sub-Saharan Africa through Transgenic Biofortified Sorghum. In: SL Taylor (ed.) Advances in Food and Nutrition Research. Burlington, USA: Academic Press, 60: 21–52. DOI: 10.1016/S1043-4526(10)60002-2
  11. Kim H., Kim S.T., Ryu J., Choi M.K., Kweon J., Kang B.C., Ahn H.M., Bae S., Kim J.S., Kim S.G. A simple, flexible and high-throughput cloning system for plant genome editing via CRISPR-Cas system. J Integr Plant Biol. 2016. V.58(8). P.705-712. doi: 10.1111/jipb.12474. 10.1111/jipb.12474
  12. Kim, J., Kim, J. New era of precision plant breeding using genome editing. Plant Biotechnol. Rep. 2019. V. P. 419–421. doi: 10.1007/s11816-019-00581-w
  13. Koeppel I., Hertig C., Hoffie R., Kumlehn J. Cas endonuclease technology - a quantum leap in the advancement of barley and wheat genetic engineering. International Journal of Molecular Sciences 2019, 20: 2647. DOI: 10.3390/ijms20112647
  14. Kuluev B. R., Gumerova G. R., Mikhaylova E. V., Gerashchenkov G. A., Rozhnova N. A., Vershinina Z. R., Khyazev A. V., Matniyazov R. T., Baymiev An. Kh., Baymiev Al. Kh., and Chemeris A. V. Delivery of CRISPR/Cas Components into Higher Plant Cells for Genome Editing. Russian Journal of Plant Physiology. 2019. V. 66, No. 5, P. 694–706. doi: 10.1134/S102144371905011X
  15. Kuluev B.R., Kiryanova O.Yu., Gerashchenkov G.A., Rozhnova N.A., Gumerova G.R., Vershinina Z.R., Matniyazov R.T., Akhmetzyanova L.U., Knyazev A.V., Mikhaylova, E.V., Garafutdinov R.R., Baymiev An.Kh., Gubaydullin I.M., Baymiev Al.Kh., Chemeris A.V. Some novelties in CRISPR/Cas genome editing and related areas. 2019b. V. 11(3). P. 315-343. DOI: 10.31301/2221-6197.bmcs.2019-27 (In Russian)
  16. Kumar T, Dweikat I, Sato S., Ge Z., Nersesian N., Chen H., Elthon T., Bean S., Ioerger B.P., Tilley M. Modulation of kernel storage proteins in grain sorghum (Sorghum bicolor (L.) Moench). Plant Biotechnol. J. V.10: 533–544. DOI: 10.1111/j.1467-7652.2012.00685.x
  17. Li A., Jia S., Yobi A., Ge Z., Sato S.J., Zhang C., Angelovici R., Clemente T.E., Holding D.R. Editing of an alpha-kafirin gene family increases digestibility and protein quality in sorghum. Plant Physiol. 177(4): 1425-1438. DOI: 10.1104/pp.18.00200
  18. Nan G.-L., Ronceret A., Wang R.C. , Fernandes J. F., Cande W.Z., Walbot V. Global transcriptome analysis of two ameiotic1 alleles in maize anthers: defining steps in meiotic entry and progression through prophase I. BMC Plant Biol. 2011. 11: 120. doi: 10.1186/1471-2229-11-120
  19. Pawlowski W.P., Wang C.-J. R., Golubovskaya I.N., Szymaniak J.M., Shi L., Hamant O., Zhu T., Harper L., Sheridan W.F., Cande W.Z. Maize AMEIOTIC1 is essential for multiple early meiotic processes and likely required for the initiation of meiosis. Proc Natl Acad Sci USA. V.106(9). P.3603-3608. doi: 10.1073/pnas.0810115106
  20. Rozhnova N.A., Gerashchenkov G.A., Chemeris A.V. The creation of an expression vector for genome editing of the EDS 1 gene. 2019. V.11(4). P. 422-429. DOI: 10.31301/2221-6197.bmcs.2019-35 (In Russian)
  21. Tilman, D., Balzer, C., Hill, J. & Befort, B. L. Global food demand and the sustainable intensification of agriculture. Natl Acad. Sci. USA. 2011. V. 108. P. 20260–20264. doi: 10.1073/pnas.1116437108
  22. Wu Y., Yuan L., Guo X., Messing J. Mutation in the seed storage protein kafirin creates a high-value food trait in sorghum. Nature Commun. 2013. V. 4. P. 2217 DOI: 10.1038/ncomms3217
  23. Zhu, H., Li, C. & Gao, C. Applications of CRISPR–Cas in agriculture and plant biotechnology. Rev. Mol. Cell Biol. 2020. doi: 10.1038/s41580-020-00288-9
  24. Zhang Y., Massel K., Godwin I.D., Gao C. Applications and potential of genome editing in crop improvement. Genome Biology. V.19: 210. doi: 10.1186/s13059-018-1586-y
Download pdf
up
eISSN: 2221-6197 DOI: 10.31301/2221-6197