Biomics

This analytical review describes the emergence of a novel branch of polymer science called “polymeromics” and the research perspectives of its applications in the origin of biomolecular coding or biogeochemical templating and supramolecular code decoding.

polymers, synthon, tecton, polymeromics, supramolecular biochemistry, receptors, substrates, informational biomolecules, matric code, templating

1. Aarstad O.A., Tøndervik A., Sletta H., Skjåk-Bræk G. Alginate sequencing: an analysis of block distribution in alginates using specific alginate degrading enzymes // Biomacromolecules. 2012. V. 13. Issue 1. P. 106-116.
2. Alcalde M., Campuzano O., Allegue C., Torres M., Arbelo E., Partemi S., Iglesias A., Brugada J., Oliva A., Carracedo A., Brugada R. Sequenom MassARRAY approach in the arrhythmogenic right ventricular cardiomyopathy post-mortem setting: clinical and forensic implications // Int. Journ. Legal Med. 2015. V. 129, Issue 1. P. 1-10.
3. Allegue C., Gil R., Sanchez-Diz P., Torres M., Quintela I., Carracedo A., Brión M. A new approach to long QT syndrome mutation detection by Sequenom MassARRAY system // Electrophoresis. 2010. V. 31, Issue 10. P. 1648-1655.
4. Altenbach D., Robatzek S. Pattern recognition receptors: from the cell surface to intracellular dynamics // Mol. Plant. Micr. Interact. 2007. V. 20, Issue 9. P. 1031-1039.
5. Altman S. The RNA-Protein World // RNA. 2013. V. 19. Issue 5. P. 589-590.
6. Altuntaş E. Polymeromics: structural elucidation of macromolecules via tandem mass spectrometry utilizing various ionization techniques / E. Altuntaş. – Jena: Friedrich-Schiller-Universität, 2013. – 233 p.
7. Altuntaş E., Krieg A., Baumgaertel A., Crecelius A.C., Schubert U.S. ESI, APCI, and MALDI tandem mass spectrometry of poly(methyl acrylate)s: A comparison study for the structural characterization of polymers synthesized via CRP techniques and the software application to analyze MS/MS data // Journal of Polymer Science, Part A: Polymer Chemistry. 2013. Vol. 51, Issue 7. P. 1595–1605.
8. Altuntas E., Schubert U. Polymeromics: Structural characterization of polymers towards de novo sequencing via tandem mass spectrometry // Materials of the 6th International Symposium on the Separation and Characterization of Natural and Synthetic Macromolecules (6-8 February 2013; Dresden, IPF). – Dresden: Leibniz-Institut für Polymerforschung (Leibniz Institute of Polymer Research), – P. 14. (p. 117); URL: https://www.yumpu.com/en/document/view/13470812/s-leibniz-institut-fur-polymerforschung-dresden-ev/117.
9. Altuntaş E., Weber C., Kempe K., Schubert U.S. Comparison of ESI, APCI and MALDI for the (tandem) mass analysis of poly(2-ethyl-2-oxazoline)s with various end-groups // European Polymer Journal. 2013. V. 49, Issue 8. P. 2172–2185.
10. Altuntaş E., Schubert U.S. "Polymeromics": Mass spectrometry based strategies in polymer science toward complete sequencing approaches: a review // Anal. Chim. 2014. V. 808. P. 56-69.
11. Andras P., Andras C. The origins of life – the “protein interaction world” hypothesis: protein interactions were the first form of self-reproducing life and nucleic acids evolved later as memory molecules // Medical Hypotheses. 2005. V. 64. P. 678-688.
12. Andreeva N., Ryazanova L., Dmitriev V., Kulakovskaya T., Kulaev I. Cytoplasmic inorganic polyphosphate participates in the heavy metal tolerance of Cryptococcus humicola // Folia Microbiol. 2014. V. 59, Issue 5. P. 381-389.
13. Andreeva N., Ryazanova L., Dmitriev V., Kulakovskaya T., Kulaev I. Adaptation of Saccharomyces cerevisiae to toxic manganese concentration triggers changes in inorganic polyphosphates // FEMS Yeast Res. 2013. V. 13, Issue 5. P. 463-470.
14. Ashline D., Singh S., Hanneman A., Reinhold V. Congruent strategies for carbohydrate sequencing. 1. Mining structural details by MSn // Anal. Chem. 2005. V. 77. Issue 19. P. 6250-6262.
15. Ashmead H.M., Negron L., Webster K., Arcus V., Gerrard J.A. Proteins as supramolecular building blocks: Nterm-Lsr2 as a new protein tecton // Biopolymers. 2015. V. 103. Issue 5. P. 260-270.
16. Ban C., Ramakrishnan B., Sundaralingam M. A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadruplet // Journ. Mol. Biol. 1994. V. 236. Issue 1. P. 275-285.
17. Banoub J., El Aneed A., Cohen A., Martin P. Characterization of the O-4 phosphorylated and O-5 substituted Kdo reducing end group and sequencing of the core oligosaccharide of Aeromonas salmonicida ssp salmonicida lipopolysaccharide using tandem mass spectrometry // Eur. Journ. Mass Spectrom. 2004. V. 10. Issue 5. P. 715-730.
18. Barone F., Chirico G., Matzeu M., Mazzei F., Pedone F. Triple helix DNA oligomer melting measured by fluorescence polarization anisotropy // Eur. Biophys. Journ. 1998. V. 27. Issue 2. P. 137-146.
19. Bertini I., Gray H.B., Stiefel E.I., Valentine J.S. Biological Inorganic Chemistry Structure and Reactivity / University Science Books, Sausalito, California, 2007, 739 p.
20. Białońska A., Ciunik Z. When a host becomes a guest—competition between decreasing hydrophobic spaces and supramolecular synthon propagation // Cryst. Eng. Comm. 2011. V. 13. Issue 3. P. 967-972.
21. Böcker S. Polymeromics – sequencing synthetic polymers // Proc. Second Dutch Polymer Institute (DPI) Workshop “Synthesis, formulation and sequencing of pharmapolymers and nanoparticle formulations” (9 Dec. 2013; Jena, DPI). – Jena: Dutch Polymer Institute [DPI], Jena Center for Soft Matter [JCSM], 2013 – URL: http://www.schubert-group.de/DPI_leafletHTE_workshop2_def.pdf.
22. Boersema P.J., Taouatas N., Altelaar A.F., Gouw J.W., Ross P.L., Pappin D.J., Heck A.J., Mohammed S. Straightforward and de novo peptide sequencing by MALDI-MS/MS using a Lys-N metalloendopeptidase // Mol. Cell Proteom. 2009. V. 8. Issue 4. P. 650-660.
23. Bradić M., Costa J., Chelo I.M. Genotyping with Sequenom // Meth. Mol. Biol. 2011. Vol. 772. P. 193-210.
24. Buggs R.J., Chamala S., Wu W., Gao L., May G.D., Schnable P.S., Soltis D.E., Soltis P.S., Barbazuk W.B. Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping // Mol. Ecol. 2010. Vol. 19, Suppl. 1. P. 132-146.
25. Bullard T., Freudenthal J., Avagyan S., Kahr B. Test of Cairns-Smith's 'crystals-as-genes' hypothesis // Faraday Discuss. 2007. V. 136. P. 231-245.
26. Burton A.S., Lehman N. DNA Before Proteins? Recent Discoveries in Nucleic Acid Catalysis Strengthen the Case // Astrobiology. 2009. V. 9. P. 125-130.
27. Bussière F., Perreault J.P. On the road to a DNA-protein world // RNA. 1995. V. 1. Issue 5. P. 451-452.
28. Caetano-Anolles G., Wang M., Caetano-Anolles D., Mittenthal J.E. The origin, evolution and structure of the protein world // Biochem. Journ. 2009. V. 417. P. 621-637.
29. Cairns-Smith A.G. Takeover mechanisms and early biochemical evolution // Biosystems. 1977. V. 9, Iss. 2-3. P. 105-109.
30. Cairns-Smith A.G. The origin of life and the nature of the primitive gene // Journ. Theor. Biol. 1966. V. 10, Issue 1. P. 53-88.
31. Cairns-Smith A.G., Ingram P., Walker G.L. Formose production by minerals: possible relevance to the origin of life // Journ. Theor. Biol. 1972. V. 35, Issue 3. P. 601-604.
32. Callewaert N., Geysens S., Molemans F., Contreras R. Ultrasensitive profiling and sequencing of N-linked oligosaccharides using standard DNA-sequencing equipment // Glycobiology. 2001. V. 11. Issue 4. P. 275-281
33. Cancilla M.T., Penn S.G., Lebrilla C.B. Alkaline degradation of oligosaccharides coupled with matrix-assisted laser desorption/ionization Fourier transform mass spectrometry: a method for sequencing oligosaccharides // Anal. Chem. 1998. V. 70. Issue 4. P. 663-672.
34. Cantor C.R. Company profile: Sequenom, Inc. // Pharmacogenomics. 2012. V. 13, Issue 5. P. 529-351.
35. Carr S.A., Biemann K. Gas chromatographic mass spectrometric sequencing of peptides and proteins containing gamma-carboxyglutamic acid // Biomed. Mass Spectrom. 1980. V. 7. Issue 4. P. 172-178.
36. Cerda B.A., Horn D.M., Breuker K., McLafferty F.W. Sequencing of specific copolymer oligomers by electron-capture-dissociation mass spectrometry // Journ. Am. Chem. Soc. 2002. V. 124. Issue 31. P. 9287-9291.
37. Chen W.T., Huang M.F., Chang H.T. Using surface-assisted laser desorption / ionization mass spectrometry to detect SS- and DS-oligodeoxynucleotides // Journ. Am. Soc. Mass Spectrom. 2013. V. 24, Issue 6. P. 877-883.
38. Chen X., Flynn G.C. Gas-phase oligosaccharide nonreducing end (GONE) sequencing and structural analysis by reversed phase HPLC/mass spectrometry with polarity switching // Journ. Am. Soc. Mass Spectrom. 2009. V. 20. Issue 10. P. 1821-1833.
39. Chernoff Y.O. Mutations and natural selection in the protein world // Journ. Mol. Biol. 2011. V. 413. Issue 3. P. 525-526.
40. Chin J.Y., Schleifman E.B., Glazer P.M. Repair and recombination induced by triple helix DNA // Front. Biosci. 2007. V. 12. P. 4288-4297.
41. Chou C.W., Bingham S.E., Williams P. Affinity methods for purification of DNA sequencing reaction products for mass spectrometric analysis // Rap. Comm. Mass Spectrom. 1996. V. 10. Issue 11. P. 1410-1414.
42. Cordes M.H., Stewart K.L. The porous borders of the protein world // Structure. 2012. V. 20. Issue 2. P. 199-200.
43. Cottrell J.S. Peptide sequencing by matrix-assisted laser desorption ionization / time-of-flight mass spectrometry // Biochem. Soc. Trans. 1995. Vol. 23, Issue 4. P. 914-917.
44. Cullinan A., Cantor C. Sequenom, Inc. // Pharmacogenomics. 2008. V. 9, Issue 9. P. 1211-1215.
45. da Silva J.A. From the RNA world to the RNA/protein world: contribution of some riboswitch-binding species? // Journ. Theor, Biol. 2015, V. 370. P. 197-201.
46. Dabrowski J., Ejchart A., Bruntz R., Egge H. Sequencing of peracetylated oligosaccharides by rotating-frame nuclear Overhauser enhancement spectroscopy // FEBS Lett. 1989. V. 246. Iss. 1-2. P. 229-232.
47. Deepa S.S., Kalayanamitra K., Ito Y., Kongtawelert P., Fukui S., Yamada S., Mikami T., Sugahara K. Novel sulfated octa- and decasaccharides from squid cartilage chondroitin sulfate E: sequencing and application for determination of the epitope structure of the monoclonal antibody MO-225 // Biochemistry. 2007. V. 46. Issue 9. P. 2453-2465.
48. Demine R, Walden P. Sequit: software for de novo peptide sequencing by matrix assisted laser desorption/ionization post-source decay mass spectrometry // Rap. Comm. Mass Spectrom. 2004. V. 18, Issue 8. P. 907-913.
49. Dorey E. Sequenom steps toward drug development // Nat. Biotechnol. 2001. Vol. 19, Issue 7. P. 600-601.
50. Dostert C., Meylan E., Tschopp J. Intracellular pattern-recognition receptors // Adv. Drug Deliv. Rev. 2008. V. 60, Issue 7. P. 830-840.
51. Drummond K.J., Yates E.A., Turnbull J.E. Electrophoretic sequencing of heparin/heparan sulfate oligosaccharides using a highly sensitive fluorescent end label // Proteomics. 2001. V. 1. Issue 2. P. 304-310.
52. Du M., Jiang X.J., Zhao X.J. Molecular tectonics of mixed-ligand metal-organic frameworks: positional isomeric effect, metal-directed assembly, and structural diversification // Inorg. Chem. 2007. V. 46. Issue 10. P. 3984-3995.
53. Du M., Zhang Z.H., Tang L.F., Wang X.G., Zhao X.J., Batten S.R. Molecular tectonics of metal-organic frameworks (MOFs): a rational design strategy for unusual mixed-connected network topologies // Chemistry. 2007. V. 13. Issue 9. P. 2578-2586.
54. Edge C.J., Rademacher T.W., Wormald M.R., Parekh R.B., Butters T.D., Wing D.R., Dwek R.A. Fast sequencing of oligosaccharides: the reagent-array analysis method // Proc. Nat. Acad. Sci. USA. 1992. V. 89. Issue 14. P. 6338-6342.
55. Edwards J.R., Ruparel H., Ju J. Mass-spectrometry DNA sequencing // Mutat. Res. 2005. V. 573, Iss. 1-2. P. 3-12.
56. Ehrhart J., Planeix J.M., Kyritsakas-Gruber N, Hosseini MW. Molecular tectonics: formation and structural studies on a 2-D directional coordination network based on a non-centric metacyclophane based tecton and zinc cation // Dalton Trans. 2010. V. 39. Issue 8. P. 2137-2146.
57. El Garah M., Ciesielski A., Marets N., Bulach V., Hosseini M.W., Samorì P. Molecular tectonics based nanopatterning of interfaces with 2D metal-organic frameworks (MOFs) // Chem. 2014. V. 50. Issue 82. P. 12250-12253.
58. Eschenmoser A. Chemical etiology of nucleic acid structure // Science. 1999. V. 284. Issue 5423. P. 2118-2124.
59. Estenne-Bouhtou G., Kullander K., Karlsson M., Ebendal T., Hacksell U., Luthman K. Design, synthesis, tandem mass spectrometric sequencing and biological activity of NGF mimetics. Int. Journ. Pept. Prot. Res. 1996. V. 48. Issue 4. P. 337-346.
60. Fernández de Castro I., Tenorio R., Risco C. Virus assembly factories in a lipid world // Curr. Opin Virol. 2016. V. 18. P. 20-26.
61. Ferreira T.M., Medeiros M.G., Dietrich C.P., Nader H.B. Structure of heparan sulfate from the fresh water mollusc Anomantidae sp: sequencing of its disaccharide units // Int. J. Biochem. 1993. V. 25. Issue 9. P. 1219-1225.
62. Finkelstein J, Eccleston A, Shadan S. The protein world // Nature. 2016. V. 537. Issue 7620. P. 319.
63. Fitzgerald M.C., Zhu L., Smith L.M. The analysis of mock DNA sequencing reactions using matrix-assisted laser desorption/ionization mass spectrometry // Rap. Comm. Mass Spectrom. 1993. V. 7, Issue 10. P. 895–897.
64. Fu D.J., Tang K., Braun A., Reuter D., Darnhofer-Demar B., Little D.P., O’Donnell M.J., Cantor C.R., Koster H. Sequencing exons 5 to 8 of the p53 gene by MALDI-TOF mass spectrometry // Nat. Biotechnol. 1998. V. 16, Issue 4. P. 381–384.
65. Gabriel S., Ziaugra L. SNP genotyping using Sequenom MassARRAY 7K platform // Curr. Protoc. Hum. Genet. 2004. Chapter 2. Unit 2.12 [DOI: 10.1002/0471142905.hg0212s42].
66. Gama S., Rodrigues I., Mendes F., Santos I.C., Gabano E., Klejevskaja B., Gonzalez-Garcia J., Ravera M., Vilar R., Paulo A. Anthracene-terpyridine metal complexes as new G-quadruplex DNA binders // Journ. Inorg. Biochem. 2016. V. 160. P. 275-286.
67. Garozzo D., Nasello V., Spina E., Sturiale L. Discrimination of isomeric oligosaccharides and sequencing of unknowns by post source decay matrix-assisted laser desorption/ionization time-of-flight mass spectrometry // Rap. Comm. Mass Spectrom.1997. V.11. Issue 14. P. 1561-1566.
68. Gordon K.H. Were RNA replication and translation directly coupled in the RNA (+protein?) World? // Journ. Theor. Biol. 1995. V. 173. Issue 2. P. 179-193.
69. Gradov O.V. Qualimetric approach to molecular phylogenetics // In: NGS-2014. 2014. P. 6.
70. Gradov O.V. Real time complexation of XNA thermocycling and differential scanning calorimetry-on-a-chip as a novel tool for modeling and analysis of templated synthesis or self-assembly of the proto-genetic code // RTAC. 2016. V. 2. P. 392.
71. Grosshans P., Jouaiti A., Bulach V., Planeix J.M., Hosseini M.W., Nicoud J.F. Molecular tectonics: from enantiomerically pure sugars to enantiomerically pure triple stranded helical coordination network // Chem. Comm. 2003. Issue 12. P. 1336-1337.
72. Guillaumie F., Justesen S.F., Mutenda K.E, Roepstorff P., Jensen K.J., Thomas O.R. Fractionation, solid-phase immobilization and chemical degradation of long pectin oligogalacturonides. Initial steps towards sequencing of oligosaccharides // Carbohydr Res. 2006. V. 341. Issue 1. P. 118-129.
73. Guttman A., Ulfelder K.W. Exoglycosidase matrix-mediated sequencing of a complex glycan pool by capillary electrophoresis // Journ. Chromatogr. A. 1997. V. 781. Issue 1-2. P. 547-554.
74. Haebel S., Bahrke S., Peter M.G. Quantitative sequencing of complex mixtures of heterochitooligosaccharides by vMALDI-linear ion trap mass spectrometry // Anal. Chem. 2007. V. 79. Issue 15. P. 5557-5566.
75. Hamer S.N., Moerschbacher B.M., Kolkenbrock S. Enzymatic sequencing of partially acetylated chitosan oligomers // Carbohydr. Res. 2014. V. 392. P. 16-20.
76. Hanrahan S., Charlwood J., Tyldesley R., Langridge J., Bordoli R., Bateman R., Camilleri P. Facile sequencing of oligosaccharides by matrix-assisted laser desorption/ionisation on a hybrid quadrupole orthogonal acceleration time-of-flight mass spectrometer // Rap. Comm. Mass Spectrom. 2001. V. 15. Issue 14. P. 1141-1151.
77. Haynes D.A., Chisholm J.A., Jones W., Motherwell W.S. Supramolecular synthon competition in organic sulfonates: A CSD survey // Cryst. Eng. Comm. 2004. V. 6. Issue 95. P. 584-588.
78. Hettick J.M., McCurdy D.L., Barbacci D.C., Russell D.H. Optimization of sample preparation for peptide sequencing by MALDI-TOF photofragment mass spectrometry // Anal. Chem. 2001. V. 73, Issue 22. P. 5378-5386.
79. Hodgson J. Sequenom patent and deal // Nat. Biotechnol. 1999. V. 17, Issue 10. P. 941.
80. Hoffmann C., Blechschmidt D., Krüger R., Karas M., Griesinger C. Mass spectrometric sequencing of individual peptides from combinatorial libraries via specific generation of chain-terminated sequences // Journ. Comb. Chem. 2002. V. 4. Issue 1. P. 79-86.
81. Holm N.G., Cairns-Smith A.G., Daniel R.M., Ferris J.P., Hennet R.J., Shock E.L., Simoneit B.R., Yanagawa H. Marine hydrothermal systems and the origin of life: future research // Orig. Life. Evol. Biosph. 1992. V. 22, Iss. 1-4. P. 181-242.
82. Hosseini M.W. Molecular tectonics: from simple tectons to complex molecular networks // Acc. Chem. Res. 2005. V. 38. Issue 4. P. 313-323.
83. Huang R., Liu J., Sharp J.S. An approach for separation and complete structural sequencing of heparin/heparan sulfate-like oligosaccharides // Anal. Chem. 2013. V. 85. Issue 12. P. 5787-5795.
84. Huang Y., Yu X., Mao Y., Costello C.E., Zaia J., Lin C. De novo sequencing of heparan sulfate oligosaccharides by electron-activated dissociation // Anal. Chem. 2013. V. 85. Issue 24. P. 11979-11986.
85. Hudson G., Biemann K. Mass spectrometric sequencing of proteins. The structure of subunit I of monellin // Biochem. Biophys. Res. Commun. 1976. V. 71, Issue 1. P. 212-220.
86. Ikehara K. [GADV]-protein world hypothesis on the origin of life // Orig. Life Evol. Biosph. 2014. V. 44. Issue 4. P. 299-302.
87. Ikehara K. Possible steps to the emergence of life: the [GADV]-protein world hypothesis // Chem. Rec. 2005. V. 5. Issue 2. P. 107-118.
88. Ikehara K. Pseudo-replication of [GADV]-proteins and origin of life // Int. Journ. Mol. Sci. 2009. V. 10. Issue 4. P. 1525-1537.
89. Ikehara K., Omori Y., Arari R., Hirose A. A novel theory on the origin of the genetic code: A GNC-SNS hypothesis // Journ. Mol. Evol. 2002. V. 54. Issue 4. P. 530-538.
90. Jacobson K.B., Arlinghaus H.F., Buchanan M.V., Chen C.H., Glish G.L., Hettich R.L., McLuckey S.A. Applications of mass spectrometry to DNA sequencing // Genet. Anal. Tech. Appl. 1991. V. 8. P. 223-229.
91. Jacobson K.B., Arlinghaus H.F., Schmitt H.W., Sachleben R.A., Brown G.M., Thonnard N., Sloop F.V., Foote R.S., Larimer F.W., Woychik R.P., England M.W., Burchett K.L., Jacobson D.A. An approach to the use of stable isotopes for DNA sequencing // Genomics. 1991. V. 9, Issue 1. P. 51-59.
92. Jäger B., Lay H., Lehmann J., Ziser L. The stepwise degradation of a glycosylated aldose. A potential method for sequencing branched oligosaccharides // Carbohydr Res. 1991. V. 217. P. 99-106.
93. Jay E., Bambara R., Padmanabhan R., Wu R. DNA sequence analysis: a general, simple and rapid method for sequencing large oligodeoxyribonucleotide fragments by mapping // Nucl. Ac. Res. 1974. V. 1. Issue 3. P. 331-353.
94. Johansen P., Andersen J.D., Børsting C., Morling N. Evaluation of the iPLEX® Sample ID Plus Panel designed for the Sequenom MassARRAY® system. A SNP typing assay developed for human identification and sample tracking based on the SNPforID panel // Forens. Sci. Int. Genet. 2013. V. 7, Issue 5. P. 482-487.
95. Jouaiti A., Hosseini M.W., Kyritsakas N. Molecular tectonics: infinite cationic double stranded helical coordination networks // Chem. Comm. 2003. Issue 4. P. 472-473.
96. Keough T., Youngquist R.S., Lacey M.P. A method for high-sensitivity peptide sequencing using postsource decay matrix-assisted laser desorption ionization mass spectrometry // Proc. Nat. Acad. Sci. USA. 1999. V. 96, Issue 13. P. 7131-7136.
97. Keough T., Youngquist R.S., Lacey M.P. Sulfonic acid derivatives for peptide sequencing by MALDI MS // Anal. Chem. 2003 Vol. 75, Issue 7. P. 156A-165A.
98. Kim J.S., Cui E., Kim H.J. Picolinamidination of phosphopeptides for MALDI-TOF-TOF mass spectrometric sequencing with enhanced sensitivity // Journ. Am. Soc. Mass Spectrom. 2009. V. 20. Issue 9. P. 1751-1758.
99. Kim M.J., Chung P.J., Lee T.H., Kim T.H., Nahm B.H., Kim Y.K. Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein // Meth. Mol. Biol. 2012. V. 786. P. 65-77.
100. Kirpekar F., Norhoff E., Larsen L., Kristiansen K., Roepstorff P., Hillenkamp F. DNA sequence analysis by MALDI mass spectrometry // Nucl. Ac. Res. 1998. V. 26, Issue 11. P. 2554–2559.
101. Köster H., Tang K., Fu D.J., Braun A., van den Boom D., Smith C.L., Cotter R.J., Cantor C.R. A strategy for rapid and efficient DNA sequencing by mass spectrometry // Nat. Biotechnol. 1996. V. 14. Issue 9. P. 1123-1128.
102. Krukowskikh V., Gradov O.V. Praxeometric analysis of the selfish genetic machinery using w. gasparski criteria for extended phenotypic expressivity // In: "Life of Genomes" [International Seminar], 2014. P. 15.
103. Kulaev I., Kulakovskaya T. Polyphosphate and phosphate pump // Ann. Rev. Microbiol. 2000. V. 54. P. 709-734.
104. Kulaev I., Vagabov V., Kulakovskaya T. New aspects of inorganic polyphosphate metabolism and function // Journ. Biosci. Bioeng. 1999. V. 88, Issue 2. P. 111-129.
105. Kulaev I.S. Biochemistry of inorganic polyphosphates // Rev. Physiol. Biochem. Pharmacol. 1975. V. 73. P. 131-158.
106. Kulaev I.S., Afanasieva T.P. Localization and physiological role of inorganic polyphosphates in the cells of Endomyces magnusii // Antonie Van Leeuwenhoek. 1969. V. 35, Suppl. P. B29-B30.
107. Kulakovskaya T, Kulaev I. Enzymes of inorganic polyphosphate metabolism // Prog. Mol. Subcell Biol. 2013. V. 54. P. 39-63.
108. Kulakovskaya T.V., Lichko L.P., Vagabov V.M., Kulaev I.S. Inorganic polyphosphates in mitochondria // Biochemistry. 2010. V. 75, Issue 7. P. 825-831.
109. Kumagai Y., Akira S. Identification & functions of pattern-recognition receptors // Journ. Allergy Clin. Immunol. 2010. V. 125, Issue 5. P. 985-992.
110. Küster B., Naven T.J., Harvey D.J. Rapid approach for sequencing neutral oligosaccharides by exoglycosidase digestion and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry // Journ. Mass Spectrom. 1996. V. 31. Issue 10. P. 1131-1140.
111. Küster B., Wheeler S.F., Hunter A.P., Dwek R.A., Harvey D.J. Sequencing of N-linked oligosaccharides directly from protein gels: in-gel deglycosylation followed by matrix-assisted laser desorption/ionization mass spectrometry and normal-phase high-performance liquid chromatography // Anal. Biochem. 1997. V. 50. Issue 1. P. 82-101
112. Laine R.A. A calculation of all possible oligosaccharide isomers both branched and linear yields 1.05 x 10¹² structures for a reducing hexasaccharide: the Isomer Barrier to development of single-method saccharide sequencing or synthesis systems // Glycobiology. 1994. V. 4. Issue 6. P. 759-767.
113. Lamari F.N., Militsopoulou M., Mitropoulou TN, Hjerpe A, Karamanos NK. Analysis of glycosaminoglycan-derived disaccharides in biologic samples by capillary electrophoresis and protocol for sequencing glycosaminoglycans // Biomed. Chromatogr. 2002. V. 16. Issue 2. P. 95-102.
114. Lambros M.B., Wilkerson P.M., Natrajan R., Patani N., Pawar V., Vatcheva R., Mansour M., Laschet M., Oelze B., Orr N., Muller S., Reis-Filho J.S. High-throughput detection of fusion genes in cancer using the Sequenom MassARRAY platform // Lab. Invest. 2011. V. 91, Issue 10. P. 1491-1501.
115. Lapadula A.J., Hatcher P.J., Hanneman A.J., Ashline D.J., Zhang H., Reinhold V.N. Congruent strategies for carbohydrate sequencing. 3. OSCAR: an algorithm for assigning oligosaccharide topology from MSn data // Anal. Chem. 2005. V. 77. Issue 19. P. 6271-6279.
116. Laroy W., Contreras R., Callewaert N.. Glycome mapping on DNA sequencing equipment // Nat. Protoc. 2006. V. 1. P. 397-405.
117. Larpent P., Jouaiti A., Kyritsakas N., Hosseini M.W. Molecular tectonics: homochiral coordination networks based on combinations of a chiral neutral tecton with Hg(II), Cu(II) or Ni(II) neutral complexes as metallatectons // Dalton Trans. 2014. V. 43. Issue 5. P. 2000-2006.
118. Larralde R., Robertson M.P., Miller S.L. Rates of decomposition of ribose and other sugars: Implications for chemical evolution (RNA world/pre-RNA world/ribose stability). Proc. Nat. Acad. Sci. USA. 1995. V. 92, P. 8158-8160.
119. Lata S., Raghava G.P. PRRDB: a comprehensive database of pattern-recognition receptors and their ligands // BMC Genomics. 2008. V. 9. Art. No. 180. P. 1-6.
120. Lazcano A., Miller S.L. The Origin and Early Evolution of Life: Prebiotic Chemistry, the Pre-RNA World, and Time // Cell. 1996. V. 85. P. 793–798.
121. Lee K.B., al-Hakim A., Loganathan D., Linhardt R.J. A new method for sequencing linear oligosaccharides on gels using charged, fluorescent conjugates // Carbohydr. Res. 1991. V. 214. Issue 1. P. 155-168.
122. Li G., Pei J., Yin Y., Huang G. Direct sequencing of a disulfide-linked peptide with electrospray ionization tandem mass spectrometry // Analyst. 2015. V. 140, Issue 8. P. 2623-2627.
123. Lichko L.P., Kulakovskaya T.V., Kulaev I.S. Inorganic polyphosphates and exopolyphosphatases in different cell compartments of Saccharomyces cerevisiae // Biochemistry. 2006. V. 71, Issue 11. P. 1171-1175.
124. Lin M.J., Jouaiti A., Kyritsakas N., Hosseini M.W. Molecular tectonics: from 1-D interwoven racemic chains to quadruple-stranded helices // Chem. Comm. 2010. V. 46. Issue 1. P. 115-117.
125. Liu D., Li M., Li D. Reversible solid-gas chemical equilibrium between a 0-periodic deformable molecular tecton and a 3-periodic coordination architecture // Chem. Comm. 2009. Issue 45. P. 6943-6945.
126. Lorences E.P., Fry S.C. Sequencing of xyloglucan oligosaccharides by partial Driselase digestion: the preparation and quantitative and qualitative analysis of two new tetrasaccharides // Carbohydr. Res. 1995. V. 272. Issue 2. P. C15.
127. Lorences E.P., Fry S.C. Sequencing of xyloglucan oligosaccharides by partial Driselase digestion: the preparation and quantitative and qualitative analysis of two new tetrasaccharides // Carbohydr. Res. 1994. V. 263. Issue 2. P. 285-293
128. Ma B. Novor: Real-Time Peptide de Novo Sequencing Software // Journal of The American Society for Mass Spectrometry. 2015. V. 26. Issue 11. P. 1-10.
129. Mansurova S.E., Shakhov Y.A., Belyakova T.N., Kulaev I.S. Synthesis of inorganic pyrophosphate by animal tissue mitochondria // FEBS Lett. 1975. V. 55, Issue 1. P. 94-98.
130. Mao Y., Tan F., Yan S.G., Wu G.X., Qiao C.L., Zhang W.X., Cui F. High-throughput genotyping of single-nucleotide polymorphisms in ace-1 gene of mosquitoes using MALDI-TOF mass spectrometry // Ins. Sci. 2013. V. 20, Issue 2. – P. 167-174.
131. Marekov L., Steinert P. Charge derivatization by 4-sulfophenyl isothiocyanate enhances peptide sequencing by post-source decay matrix-assisted laser desorption/ionization time-of-flight mass spectrometry // Journ. Mass Spectrom. 2003. V. 38, Issue 4. P. 373-377.
132. Marinescu G., Ferlay S., Kyritsakas N., Hosseini M.W. Molecular tectonics: from crystals to crystals of crystals // Chem. Comm. 2013. V. 49. Issue 95. P. 11209-11211.
133. Matthews С. The HCN World. Establishing Protein – Nucleic Acid Life via Hydrogen Cyanide Polymers // Origins; Cellular Origin, Life in Extreme Habitats and Astrobiology. 2005. V. 6. P. 121-135.
134. May M. Adding sugar to bioscience. A tennis game leads to a method for sequencing polysaccharides // Sci. Am. 2002. Issue 287. No. 4. P. 38-40.
135. Melendez-Hevia E. From the RNA world to the DNA-protein world: clues to the origin and early evolution of life in the ribosome // Journ. Biosci. 2009. V. 34. Issue 6. P. 825-827.
136. Menghi G., Materazzi G. Exoglycosidases and lectins as sequencing approaches of salivary gland oligosaccharides // Histol. Histopathol. 1994. V. 9. Issue 1. P. 173-183.
137. Merzhanov A. G. The chemistry of self-propagating high-temperature synthesis // Journ. Mater. Chem. 2004. V. 14. Issue 12. P. 1779-1786.
138. Meylan E., Tschopp J., Karin M. Intracellular pattern recognition receptors in the host response // Nature. 2006. V. 442, Issue 7098. P. 39-44.
139. Minamisawa T., Suzuki K., Hirabayashi J. Multistage mass spectrometric sequencing of keratan sulfate-related oligosaccharides // Anal. Chem. 2006. V. 78. Issue 3. P. 891-900.
140. Mischnick P. Polysaccharide Sequencing // Angew. Chem. Int. Ed. 2000. V. 39. Issue 7. P. 1222-1224.
141. Mizuochi T. Microscale sequencing of N-linked oligosaccharides of glycoproteins using hydrazinolysis, Bio-Gel P-4, and sequential exoglycosidase digestion // Meth. Mol. Biol. 1993. V. 14. P. 55-68.
142. Mo W., Takao T., Shimonishi Y. Accurate peptide sequencing by post-source decay matrix-assisted laser desorption/ionization time-of-flight mass spectrometry // Rap. Comm. Mass Spectrom. 1997. V. 11, Issue 17. P. 1829-1834.
143. Monforte J., Becker C. High-throughput DNA analysis by time-of-flight mass spectrometry // Nat. Med. 1997. V. 3. P. 360–362.
144. Moon D., Song J., Kim B.J., Suh B.J., Lah M.S. Three-dimensional helical coordination networks of a hexanuclear manganese metallamacrocycle as a helical tecton // Inorg Chem. 2004. V. 43. Issue 26. P. 8230-8232.
145. Morelle W., Michalski J.C. Sequencing of oligosaccharides derivatized with benzylamine using electrospray ionization-quadrupole time of flight-tandem mass spectrometry // Electrophoresis. 2004. V. 25. Issue 14. P. 2144-2155.
146. Morgan J.W., Hettick J.M., Russell D.H. Peptide sequencing by MALDI 193-nm photodissociation TOF MS // Meth. Enzymol. 2005. V. 402. P. 186-209.
147. Mossino P. Some aspects in self-propagating high-temperature synthesis // Cerami. Intern. 2004. V. 30. Issue 3. P. 311-332.
148. Mourier P.A., Viskov C. Chromatographic analysis and sequencing approach of heparin oligosaccharides using cetyltrimethylammonium dynamically coated stationary phases // Anal. Biochem. 2004. V. 332. Issue 2. P. 299-313.
149. Mudgett M., Bowen D.V., Kindt T.J. Peptide sequencing: the utility of chemical ionization mass spectrometry // Biomed. Mass Spectrom. 1977. V. 4, Issue 3. P. 159-171.
150. Munir Z. A., Anselmi-Tamburini U. Self-propagating exothermic reactions: the synthesis of high-temperature materials by combustion // Mater. Sci. Rep. 1989. V. 3. Issue 6. P. 279-365.
151. Munir Z.A. Synthesis of high temperature materials by self-propagating combustion methods // Amer. Ceram. Soc. Bull. 1988. V. 67. Issue 2. P. 342-349.
152. Murray K.K. DNA sequencing by mass spectrometry // Journ. Mass Spectrom. 1996. V. 31. Issue 11. P. 1203-1215.
153. Nagy G., Pohl N.L. Monosaccharide identification as a first step toward de novo carbohydrate sequencing: mass spectrometry strategy for the identification and differentiation of diastereomeric and enantiomeric pentose isomers // Anal. Chem. 2015. V. 87. Issue 8. P. 4566-4571.
154. Nakagawa M., Yamagaki T., Nakanishi H. Fluorescent modification for peptide sequencing by postsource decay-matrix assisted laser desorption/ionization mass spectrometry // Electrophoresis. 2000. V. 21, Issue 9. P. 1651-1652.
155. Nishimura T., Takara M., Mukai S.A., Sawada S., Sasaki Y., Akiyoshi K. A light sensitive self-assembled nanogel as a tecton for protein patterning materials // Chem. Comm. 2016. V. 52. Issue 6. P. 1222-1225.
156. Noga MJ, Asperger A, Silberring J. N-terminal H3/D3-acetylation for improved high-throughput peptide sequencing by matrix-assisted laser desorption / ionization mass spectrometry with a time-of-flight / time-of-flight analyzer // Rap. Comm. Mass Spectrom. 2006. V. 20, Issue 12. P. 1823-1827.
157. Nugent M.A. Heparin sequencing brings structure to the function of complex oligosaccharides // Proc. Nat. Acad. Sci. USA. 2000. V. 97. Issue 19. P. 10301-10303.
158. Oba T., Fukushima J., Maruyama M., Iwamoto R., Ikehara K. Catalytic activities of [GADV]-peptides. Formation and establishment of [GADV]-protein world for the emergence of life // Orig. Life Evol. Biosph. 2005. V. 35. Issue 5. P. 447-460.
159. Orehov F.C., Gradov O.V. In situ / real time analysis in frame of COBAC, QSPR, QSAR and SBGN as a novel tool for the biosimilarity studies and physio-chemical prognostics in the biomedicine-assisted screening and experimental toxicology and allergology // Journ. Bioanal. Biomed. 2015. V. 7. P. 95.
160. Orehov T.C., Gradov O.V. Hybridization of COBAC, QSPR / QSAR and SBGN technologies: The unity of theory and practice for biomedical technique design and biochemical diagnostic information analysis // Journ. Med. Bioeng. 2016. V. 5. P. 128–132.
161. Orehov F.K., Gradov O.V. Spectral and fluorescent detection of the DNA / XNA cyclic code decoding on the selectively stained microscopic samples // In: "Life of Genomes" [International Seminar]. 2014. P. 16.
162. Osamura R.Y. Molecular cytopathology: a new era of clinical cytology // Acta Cytol. 2009. V. 53, Issue 3. P. 245-246.
163. Owens D.R., Bothner B., Phung Q., Harris K., Siuzdak G. Aspects of oligonucleotide and peptide sequencing with MALDI and electrospray mass spectrometry // Bioorg. Med. Chem. 1998. V. 6, Issue 9. P. 1547-1554.
164. Papadakis G., Tsortos A., Gizeli E. Triple-helix DNA structural studies using a Love wave acoustic biosensor // Biosens. Bioelectron. 2009. V. 25. Issue 4. P. 702-707.
165. Patel B.A., Debenedetti P.G. Stillinger F.H., Rossky P.J. The effect of sequence on the conformational stability of a model heteropolymer in explicit water // Journ. Chem. Phys. 2008. V. 128. Issue 17. P. 175102-1 – 175102-18.
166. Paulick M.G., Hart K.M., Brinner K.M., Tjandra M., Charych D.H., Zuckermann R.N. Cleavable hydrophilic linker for one-bead-one-compound sequencing of oligomer libraries by tandem mass spectrometry // Journ. Comb. Chem. 2006. V. 8. Issue 3. P. 417-426.
167. Paz M.A., Bernath A., Henson E., Blumenfeld O.O., Gallop P.M. Reductive desulfuration and mass spectrometric sequencing of sulfur-containing peptides // Anal. Biochem. 1970. V. 36, Issue 2. P. 527-535.
168. Pestov N.A., Kulakovskaya T.V., Kulaev I.S. Inorganic polyphosphate in mitochondria of Saccharomyces cerevisiae at phosphate limitation and phosphate excess // FEMS Yeast Res. 2004. V. 4, Issue 6. P. 643-648.
169. Pikulski M., Hargrove A., Shabbir S.H., Anslyn E.V., Brodbelt J.S. Sequencing and characterization of oligosaccharides using infrared multiphoton dissociation and boronic acid derivatization in a quadrupole ion trap // J. Am. Soc. Mass Spectrom. 2007. V. 18. Issue 12. P. 2094-2106.
170. Pontes-Buarque M., Tessis A.C., Bonapace J.A., Monte M.B., Souza-Barros F.D., Vieyra A. Surface charges and interfaces: implications for mineral roles in prebiotic chemistry // An. Acad. Bras. Cienc. 2000. V. 72, Issue 3. P. 317-322.
171. Prime S., Dearnley J., Ventom A.M., Parekh R.B., Edge C.J. Oligosaccharide sequencing based on exo- and endoglycosidase digestion and liquid chromatographic analysis of the products // Journ. Chromatogr. A. 1996. V. 720. Iss. 1-2. P. 263-274.
172. Qiu C., Kumar S., Guo J., Yu L., Guo W., Shi S., Russo J.J., Ju J. Design and synthesis of cleavable biotinylated dideoxynucleotides for DNA sequencing by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry // Anal. Biochem. 2012. V. 427, Issue 2. P. 193-201.
173. Quéméner B., Vigouroux J., Rathahao E., Tabet J.C., Dimitrijevic A., Lahaye M. Negative electrospray ionization mass spectrometry: a method for sequencing & determining linkage position in oligosaccharides from branched hemicelluloses // Journ. Mass Spectrom. 2015. V. 50, Issue 1. P. 247-264.
174. Ranganathan A., Heisen B.C., Dix I., Meyer F. A triazine-based three-directional rigid-rod tecton forms a novel 1D channel structure // Chem. Comm.. 2007. Issue 35. P. 3637-3639.
175. Ratner V.A., Zharkikh A.A., Kolchanov N., Rodin S.N., Solovyov V.V., Antonov A.S. Dynamic Properties of Self-Reproducing Molecular Systems: Theoretical Analysis // Biomathematics. – 1996. – V. 24. – P. 11-37.
176. Ratner V.A., Zharkikh A.A., Kolchanov N., Rodin S.N., Solovyov V.V., Antonov A.S. The Origin and Evolution of the Genetic Coding-System // Biomathematics. – 1996. – V. 24. – P. 39-70.
177. Ratner V.A., Zharkikh A.A., Kolchanov N., Rodin S.N., Solovyov V.V., Antonov A.S. Theoretical Analysis of the Evolution of Genes and Proteins // Biomathematics. – 1996. – V. 24. – P. 93-145.
178. Ratner V.A., Zharkikh A.A., Kolchanov N., Rodin S.N., Solovyov V.V., Antonov A.S. The Principles of the Origin and Evolution of Genomes // Biomathematics. – 1996. – V. 24. – P. 201-240.
179. Reiber D.C., Brown R.S., Weinberger S., Kenny J., Bailey J. Unknown peptide sequencing using matrix-assisted laser desorption/ionization and in-source decay // Anal. Chem. 1998. V. 70, Issue 6. P. 1214-1222.
180. Ren D., Pipes G.D., Hambly D., Bondarenko P.V., Treuheit M.J., Gadgil H.S. Top-down N-terminal sequencing of Immunoglobulin subunits with electrospray ionization time of flight mass spectrometry // Anal. Biochem. 2009. V. 384, Issue 1. P. 42-48.
181. Robertson M.P., Miller S.L. Prebiotic synthesis of 5-substituted uracils: a bridge between the RNA world and the DNA-protein world // Science. 1995. V. 268. Issue 5211. P. 702-705.
182. Rosenfeld L., Ballou C.E. An approach to the sequencing of yeast mannan // Biochem. Biophys. Res. Commun. 1975. V. 63. Issue 3. P. 571-579.
183. Roskey M.T., Juhasz P., Smirnov I.P., Takach E.J., Martin S.A., Haff L.A. DNA sequencing by delayed extraction-matrix-assisted laser desorption / ionization time of flight mass spectrometry // Proc. Nat. Acad. Sci. USA. 1996. V. 93, Issue 10. P. 4724–4729.
184. Rudd P.M., Colominas C., Royle L., Murphy N., Hart E., Merry A.H., Hebestreit H.F., Dwek R.A. A high-performance liquid chromatography based strategy for rapid, sensitive sequencing of N-linked oligosaccharide modifications to proteins in sodium dodecyl sulphate polyacrylamide electrophoresis gel bands // Proteomics. 2001. V. 1. Issue 2. P. 285-294.
185. Rudd P.M., Dwek R.A. Rapid, sensitive sequencing of oligosaccharides from glycoproteins // Curr. Opin. Biotechnol. 1997. V. 8. Issue 4. P. 488-497.
186. Rudd P.M., Guile G.R., Küster B., Harvey D.J., Opdenakker G., Dwek R.A. Oligosaccharide sequencing technology // Nature. 1997. V. 388. Issue 6638. P. 205-207.
187. Saad O.M., Leary J.A. Heparin sequencing using enzymatic digestion and ESI-MSn with HOST: a heparin/HS oligosaccharide sequencing tool // Anal. Chem. 2005. V. 77, Issue 18. P. 5902-5911.
188. Salih E. Synthesis of a radioactive thiol reagent, 1-S-[3H]carboxymethyl-dithiothreitol: identification of the phosphorylation sites by N-terminal peptide sequencing and matrix-assisted laser desorption / ionization time-of-flight mass spectrometry // Anal. Biochem. 2003. V. 319, Issue 1. P. 143-158.
189. Santos G.C. Standardizing preanalytical variables for molecular cytopathology // Cancer Cytopathol. 2013. V. 121, Issue 7. P. 341-343. 
190. Schenauer M.R., Meissen J.K., Seo Y., Ames J.B., Leary J.A. Heparan sulfate separation, sequencing, and isomeric differentiation: ion mobility spectrometry reveals specific iduronic and glucuronic acid-containing hexasaccharides // Anal. Chem. 2009. V. 81. Issue 24. P. 10179-10185.
191. Segré D., Ben-Eli D., Deamer D.W., Lancet D. The lipid world // Orig. Life Evol. Biosph. 2001. V. 31. Iss. 1-2. P. 119-145.
192. Shaler T.A., Tan Y., Wickham J.N., Wu K., Becker C.H. Analysis of enzymatic DNA sequencing reactions by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry // Rap. Com. Mass Spectrom. 1995. V. 9, Issue 10. 942-947.
193. Sharma V.K., Glick J., Liao Q., Shen C., Vouros P. GenoMass software: a tool based on electrospray ionization tandem mass spectrometry for characterization and sequencing of oligonucleotide adducts // Journ. Mass Spectrom. 2012. V. 47. Issue 4. P. 490-501.
194. Shevchenko A., Wilm M., Vorm O, Mann M. Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels // Anal. Chem. 1996. V. 68. Issue 5. P. 850-858.
195. Shriver Z., Raman R., Venkataraman G., Drummond K., Turnbull J., Toida T., Linhardt R., Biemann K., Sasisekharan R. Sequencing of 3-O sulfate containing heparin decasaccharides with a partial antithrombin III binding site // Proc. Nat. Acad. Sci. USA. 2000. V. 97. Issue 19. P. 10359-10364.
196. Somuramasami J., Kenttämaa H.I. Evaluation of a novel approach for peptide sequencing: laser-induced acoustic desorption combined with P(OCH3)2+ chemical ionization and collision-activated dissociation in a Fourier transform ion cyclotron resonance mass spectrometer // Journ. Am. Soc. Mass Spectrom. 2007. V. 18, Issue 3. P. 525-540.
197. Song J., Kim H.J. Matrix-assisted laser desorption/ionization mass spectrometry peptide sequencing utilizing selective N-terminal bromoacetylation // Anal. Biochem. 2012. V. 423, Issue 2. P. 269-276.
198. Spevacek J. Polymeromics? // It’s the Rheo Thing [St. Paul, Minnesota, USA]. – 2013. – Jul. 07 – URL: http://www.rheothing.com/2013/07/polymeromics.html
199. Spevacek J. The Omics of Polymers // It’s the Rheo Thing [St. Paul, Minnesota, USA]. – 2012. – Aug. 08 – URL page: http://www.rheothing.com/2012/08/the-omics-of-polymers.html
200. Spina E., Cozzolino R., Ryan E., Garozzo D. Sequencing of oligosaccharides by collision-induced dissociation matrix-assisted laser desorption/ionization mass spectrometry // Journ. Mass Spectrom. 2000. V. 35. Issue 8. P. 1042-1048.
201. Stepanov V.A., Trifonova E.A. Multiplex SNP genotyping by MALDI-TOF mass spectrometry: Frequencies of 56 immune response gene SNPs in human populations // Molecular Biology. 2013. V. 47, Issue 6. P. 852-862.
202. Stoll M.S., Hounsell E.F., Lawson A.M., Chai W.G., Ten F.Z. Microscale sequencing of O-linked oligosaccharides using mild periodate oxidation of alditols, coupling to phospholipid and TLC-MS analysis of the resulting neoglycolipids // Eur. Journ. Biochem. 1990. V. 189. Issue 3. P. 499-507.
203. Subrahmanyam J., Vijayakumar M. Self-propagating high-temperature synthesis // Journ. Mater. Sci. 1992. V. 27. Issue 23. P. 6249-6273.
204. Sudor J., Barbier V., Thirot S., Godfrin D., Hourdet D., Millequant M., Blanchard J., Viovy J.L. New block-copolymer thermoassociating matrices for DNA sequencing: effect of molecular structure on rheology and resolution // Electrophoresis. 2001. V. 22. Issue 4. P. 720-728.
205. Surin M., Samorì P., Jouaiti A., Kyritsakas N., Hosseini M.W. Molecular tectonics on surfaces: Bottom-up fabrication of 1D coordination networks that form 1D and 2D arrays on graphite // Angew. Chem. Int. Ed. 2007. V. 46. Issue 1-2. P. 245-249.
206. Syrmis M.W., Moser R.J., Kidd T.J., Hunt P., Ramsay K.A., Bell S.C., Wainwright C.E., Grimwood K., Nissen M.D., Sloots T.P., Whiley D.M. High-throughput single-nucleotide polymorphism-based typing of shared Pseudomonas aeruginosa strains in cystic fibrosis patients using the Sequenom iPLEX platform // Journ. Med. Microbiol. 2013. V. 62, Part 5. P. 734-740.
207. Taranenko N.I., Allman S.L., Golovlev V.V., Taranenko N.V., Isola N.R., Chen C.H. Sequencing DNA using mass spectrometry for ladder detection // Nucl. Ac. Res. 1998. V. 26, Issue 10. P. 2488–2490.
208. Tersariol I.L., Ferreira T.M., Medeiros M.G., Porcionatto M.A., Moraes C.T., Abreu L.R., Nader H.B., Dietrich C.P. Sequencing of heparan sulfate proteoglycans: identification of variable and constant oligosaccharide regions in eight heparan sulfate proteoglycans of different origins // Braz. Journ. Med. Biol. Res. 1994. V. 27. Issue 9. P. 2097-2102.
209. Thalladi V.R., Goud B.S., Hoy V.J., Allen F.H., Howard J.A., Desiraju G. R. Supramolecular synthons in crystal engineering. Structure simplification, synthon robustness and supramolecular retrosynthesis // Chem. Comm. 1996. Issue 3. P. 401-402.
210. Thanawiroon C., Rice K.G., Toida T., Linhardt R.J. Liquid chromatography/mass spectrometry sequencing approach for highly sulfated heparin-derived oligosaccharides // Journ. Biol. Chem. 2004. V. 279. Issue 4. P. 2608-2615.
211. Thomsson K.A., Karlsson H., Hansson G.C. Sequencing of sulfated oligosaccharides from mucins by liquid chromatography and electrospray ionization tandem mass spectrometry // Anal. Chem. 2000. V. 72. Issue 19. P. 4543-4549.
212. Tomaschevsky A.A., Ryasanova L.P., Kulakovskaya T.V., Kulaev I.S. Inorganic polyphosphate in the yeast Saccharomyces cerevisiae with a mutation disturbing the function of vacuolar ATPase // Biochemistry. 2010. V. 75, Issue 8. P. 1052-1054.
213. Trembizki E., Smith H., Lahra M.M., Chen M., Donovan B., Fairley C.K., Guy R., Kaldor J., Regan D., Ward J., Nissen M.D., Sloots T.P., Whiley D.M. High-throughput informative single nucleotide polymorphism-based typing of Neisseria gonorrhoeae using the Sequenom MassARRAY iPLEX platform // Journ. Antimicrob. Chemother. 2014. V. 69, Issue 6. P. 1526-1532.
214. Turnbull J.E. Integral glycan sequencing of heparan sulfate and heparin saccharides // Meth. Mol. Biol. 2001. V. 171. P. 129-139.
215. Turnbull J.E., Hopwood J.J., Gallagher J.T. A strategy for rapid sequencing of heparan sulfate and heparin saccharides // Proc. Nat. Acad. Sci. USA. 1999. V. 96. Issue 6. P. 2698-2703.
216. Tyagi S. Taking DNA probes into a protein world // Nat. Biotech. 1996. V. 14. Issue 8. P. 947-948.
217. Vagabov V.M., Trilisenko L.V., Kulaev I.S. Dependence of inorganic polyphosphate chain length on the orthophosphate content in the culture medium of the yeast Saccharomyces cerevisiae // Biochemistry. 2000. V. 65, Issue 3. P. 349-354.
218. Vagabov V.M., Trilisenko L.V., Kulakovskaya T.V., Kulaev I.S. Effect of a carbon source on polyphosphate accumulation in Saccharomyces cerevisiae // FEMS Yeast Res. 2008. V. 8, Issue 6. P. 877-882.
219. Valent B.S., Darvill A.G., McNeil M., Robertsen B.K., Albersheim P. A general and sensitive chemical method for sequencing the glycosyl residues of complex carbohydrates // Carbohydr. Res. 1980. V. 79. Issue 2. P. 165-192.
220. Varfolomeev S.D. Kinetic models of the prebiological evolution of macromolecules. Thermocycle as motive force o the process // Mendeleev Commun., 2007. V. 17, Issue 1, pp. 7-9.
221. Venkataraman G., Shriver Z., Raman R., Sasisekharan R. Sequencing complex polysaccharides // Science. 1999. V. 286. Issue 5439. P. 537-542.
222. Virgilio A., Esposito V., Randazzo A., Mayol L., Galeone A. 8-methyl-2'-deoxyguanosine incorporation into parallel DNA quadruplex structures // Nucl. Ac. Res. 2005. V. 33. Issue 19. P. 6188-6195.
223. Volpi N., Linhardt R.J. High-performance liquid chromatography-mass spectrometry for mapping and sequencing glycosaminoglycan-derived oligosaccharides // Nat. Protoc. 2010. V. 5. Issue 6. P. 993-1004.
224. Wan C., Cui M., Song F., Liu Z., Liu S. Evaluation of effects of bivalent cations on the formation of purine-rich triple-helix DNA by ESI-FT-MS // Journ. Am. Soc. Mass. Spectrom. 2009. V. 20. Issue 7. P. 1281-1286.
225. Wang H., Zhang Y., Ma H., Ren X., Wang Y., Zhang Y., Wei Q. Electrochemical DNA probe for Hg(2+) detection based on a triple-helix DNA and Multistage Signal Amplification Strategy // Biosens. Bioelectron. 2016. V. 86. P. 907-912.
226. Wang X., Fu Y.F., Wang R.Y., Li L., Cao Y.H., Chen Y.Q., Zhao H.Z., Zhang Q.Q., Wu J.Q., Weng X.H., Cheng X.J., Zhu L.P. Identification of clinically relevant fungi and prototheca species by rRNA gene sequencing and multilocus PCR coupled with electrospray ionization mass spectrometry // PLoS One. 2014. V. 9, Issue 5. Art. No. e98110. P. 1-7.
227. Weber A.L. Energy from redox disproportionation of sugar carbon drives biotic and abiotic synthesis // Journ. Molec. Evolution, 1997. V. 44. P. 354 – 360.
228. Weber A.L. The sugar model: catalysis by amines and amino acid products // Orig. Life Evol. Biosph. 2001. V. 31, P. 71-86.
229. Westin L., Blomquist P., Milligan J.F., Wrange O. Triple helix DNA alters nucleosomal histone-DNA interactions and acts as a nucleosome barrier // Nucl. Ac. Res. 1995. V. 23. Issue 12. P. 2184-2191.
230. Wuest J.D. Engineering crystals by the strategy of molecular tectonics // Chem. Comm. 2005. Issue 47. P. 5830-5837.
231. Xu C., Guenet A., Kyritsakas N., Planeix J.M., Hosseini M.W. Molecular tectonics: heterometallic (Ir,Cu) grid-type coordination networks based on cyclometallated Ir(III) chiral metallatectons // Chem. Comm. 2015. V. 51. Issue 79. P. 14785-14788.
232. Yang M.M., Youvan D.C. A prospectus for multispectral-multiplex DNA sequencing // Nature Biotechnology. - 1983. - Vol. 7. - P. 576-580.
233. Yang Y.W., Zhang S., McCullum E.O., Chaput J.C. Experimental evidence that GNA and TNA were not sequential polymers in the prebiotic evolution of RNA // Journ. Mol. Evol. 2007. V. 65. Issue 3. P. 289-295.
234. Yu H., Zhang S., Chaput J.C. Darwinian evolution of an alternative genetic system provides support for TNA as an RNA progenitor // Nat Chem. 2012. V. 4. Issue 3. P. 183-187.
235. Zhang Q., Zmasek C.M., Godzik A. Domain architecture evolution of pattern-recognition receptors // Immunogenetics. 2010. V. 62, Issue 5. P. 263-272.
236. Zhang W., Krutchinsky A.N., Chait B.T. "De novo" peptide sequencing by MALDI-quadrupole-ion trap mass spectrometry: a preliminary study // Journ. Am. Soc. Mass Spectrom. 2003. V. 14, Issue 9. P. 1012-1021.
237. Zigon N., Kyritsakas N., Hosseini M.W. Molecular tectonics: heterometallic coordination networks based on a Pt(II) organometallic metallatecton // Dalton Trans. 2015. V. 44. Issue 32. P. 14204-14207.
238. Zipfel C. Pattern-recognition receptors in plant innate immunity // Curr. Opin. Immunol. 2008. V. 20, Issue P. 10-16.
239. Градов О.В., Градова М.А. Исследование темплатирующего эффекта минеральных подложек в абиогенном синтезе и процессах абиогенеза с использованием лабораторий на чипе с активной поверхностью // 2-я Всероссийская конференция по астробиологии: «Жизнь во Вселенной: физические, химические и биологические аспекты» (Пущино, 5-9 июня 2016). 2016. С. 2-1.
240. Градов О.В., Панкратов С.К. Методы "радиоизотопной биоинформатики" для мультиспектрального секвенирования на активном чипе // Сб. тезисов 4-й Всероссийской научно-практической конференции по геномному секвенированию (19.05.2016 г.; ИБХ РАН). 2016. С. 22.
241. Лен Ж.-М. Супрамолекулярная химия: Концепции и перспективы. Новосибирск: Издательство «Наука», 1998. 334 с.
242. Орехов Ф.К., Градов О.В., Линь В. Координатно-сканирующая векторография и угловая сканирующая векторография как метод спектрозонального оценивания в декодирующей гибридизации в режиме реального времени // Сб. тезисов 4-й Всероссийской научно-практической конференции по геномному секвенированию (19.05.2016 г.; ИБХ РАН). 2016. С. 24.