Показано место молекулярной биологии среди других современных биологических дисциплин и довольно кратко прослежено ее развитие с 80-х годов XX века по настоящее время. Проведено сравнение описательной, экспериментальной и теоретической биологической науки. Сопоставлены ряд ранее сделанных прогнозов до 2000 г. и на первое десятилетие XXI века. Основное внимание уделено методам секвенирования ДНК, полногеномному секвенированию, а также амплификации нуклеиновых кислот с помощью различных вариантов ПЦР, олигонуклеотидному синтезу, ДНК-чипам. Отражено методическое состояние и соответствующее ему приборное оснащение физико-химической биологии. Приведена информация о полностью секвенированных геномах различных организмов по состоянию на середину 2013 г. Высказано предположение, что появление в будущем нового сверхвысокопроизводительного и, вместе с тем, дешевого метода секвенирования коренным образом изменит всю биологическую науку, так как это не сможет сделать ни одна другая новая технология. Цитированная литература охватывает более чем столетний период - с 1912 по 2013 гг.
ДНК, РНК, белок, геном, секвенирование, ПЦР, гель-электрофорез, ДНК-чипы, олигонуклеотиды, геномика, транскриптомика, метиломика, протеомика, биоинформатика, биомика
1.Гвоздев В.А. Фрэнсис Крик об исследованиях в области регуляции активности генов // Биоорг. химия. 2000. Т. 26. С.782-783.
2.Готтих Б.П. Стоит вспомнить не только прогнозы Ф. Крика // Биоорг. химия. 2000. Т. 26. С.772-776.
3.Дебабов В.Г. Жизнь в динамике // Биоорг. химия. 2000. Т. 26. С.789-789.
4.Зимницкий А.Н., Башкатов С.А., Уразбаев В.Н. Взаимодействие нуклеиновых кислот и гликанов // Биофизика. 2007. Т.52. С.443-451.
5.Иванов В.Т., Берлин Ю.А. Молекулярная биология в 2000 году: прогнозы, реальность и снова прогнозы // Биоорг. химия. 2000, Т. 26. С.752-755.
6.Киселев Л.Л. Молекулярная биология от 1970 до 2000 и дальше // Биоорг. химия. 2000. Т. 26. С.767-771.
7.Краев А.С., Ли Н.Н., Сидоров Ю.Д., Твердохлебов Е.Н. Новая пленка для регистрации секвенирующих гелей // Молекуляр. биология. 1992. Т.26. С.876-879.
8.Крик Ф. Молекулярная биология в 2000 году // Природа. 1971. №7. С.42-45.
9.Крик Ф. Молекулярная биология в 2000 году // Биоорг. химия. 2000. Т. 26. С.756-760.
- Куликов А.М., Вахитов В.А. Новый класс повторяющихся элементов в межгенном спейсере рДНК диплоидного эгилопса Aegilops umbellulata // Молекуляр. биология. 1995. Т.29. С.1166-1171.
- Лысов Ю.П., Флорентьев В.Л., Хорлин А.А., Храпко К.Р., Шик В.В., Мирзабеков А.Д. Определение нуклеотидной последовательности ДНК гибридизацией с олигонуклеотидами. Новый метод // ДАН СССР. 1988. Т.303. С.1508- 1511.
- Навашин С. О диморфизме ядер в соматических клетках у Galtonia candicans // Изв. Имп. Акад. Наук. Сер. VI. 1912. №4. С.373-385.
- Навашин С. Гетеро- и идиохромозомы растительного ядра, как причина ядерного диморфизма некоторых видов растений, и значение ядерного диморфизма в процессе видообразования // Изв. Имп. Акад. Наук. Сер. VI. 1915. №17. С.1821-1834.
- Опарин А.И. Происхождение жизни. М., «Московский рабочий», 1924. 71 С.
- Поглазов Б.Ф. Некоторые замечания по поводу статьи Ф. Крика // Биоорг. химия. 2000. Т. 26. С.795-796.
- Разин С.В. Молекулярная биология на рубеже третьего тысячелетия // Биоорг. химия. 2000. Т. 26. С.790-793.
- Свердлов Е.Д. Фрэнсис Крик в его прогнозе на 2000 (Molecular Biology in the Year 2000) был почти абсолютно прав // Биоорг. химия. 2000. Т. 26. С.761-766.
- Северин Е.С. Физико-химическая биология в первой четверти XXI века // Биоорг. химия. 2000. Т. 26. С.777-778.
- Уотсон Дж.Д. Двойная спираль. Воспоминания об открытии структуры ДНК // М.: Мир, 1969. 144 С. или Уотсон Дж.Д. Двойная спираль. Воспоминания об открытии структуры ДНК // М.: "Регулярная и хаотическая динамика", 2001. 144 С.
- Чемерис А.В., Ахунов Э.Д., Вахитов В.А. Секвенирование ДНК / М.: Наука, 1999. 429 С.
- Энгельгардт В.А. К статье Ф.Крика «Молекулярная биология в 2000 году» // Природа. 1971. №7. С.46-48.
- Adamski J., Suhre K. Metabolomics platforms for genome wide association studies--linking the genome to the metabolome // Curr Opin Biotechnol. 2013. V. 24. P. 39-47.
- Adamski J. Genome-wide association studies with metabolomics // Genome Med. 2012. V. 4. P. 34.
- Akhunov E.D., Chemeris A.V., Kulikov A.M., Vakhitov V.A. Functional analysis of diploid wheat rRNA promoter by transient expression // Biochim. Biophys. Acta. 2001. V.1522. P.226-229.
- Astier Y., Braha O., Bayley H. Toward single molecule DNA sequencing: direct identification of ribonucleoside and deoxyribonucleoside 5'- monophosphates by using an engineered protein nanopore equipped with a molecular adapter // J. Am. Chem. Soc. 2006. V.128. P.1705-1710.
- Avery O.T., MacLeod C.M., McCarty M. Studies on the chemical nature of the substance inducing transformation of pneumococcal types. Induction of transformation by a desoxyribonucleic acid fraction isolated from Pneumococcus type III // J. Exp. Med. 1944. V.79. P.137-158 (перепечатка - Mol. Med. 1995. V.1. P.344-365.
- Adessi C., Matton G., Ayala G., Turcatti G., Mermod J.J., Mayer P., Kawashima E. Solid phase DNA amplification: characterisation of primer attachment and amplification mechanisms // Nucleic Acids Res. 2000. V.28. E87.
- Alvarado-Urbina G., Sathe G.M., Liu W.C., Gillen M.F., Duck P.D., Bender R., Ogilvie K.K. Automated synthesis of gene fragments // Science. 1981. V.214. P.270-24.
- Amarnath V., Broom A.D. Chemical synthesis of oligonucleotides // Chem. Rev. 1977. V.77. P.183– 217.
- Baaske P., Weinert F.M., Duhr S., Lemke K.H., Russell M.J., Braun D. Extreme accumulation of nucleotides in simulated hydrothermal pore systems // Proc Natl Acad Sci U S A. 2007. V. 104. P. 9346-9351.
- Bains W., Smith G.C. A novel method for nucleic sequence determination // J. Theor. Biol. 1988. V.135. P.303-307.
- Barany F. Genetic disease detection and DNA amplification using cloned thermostable ligase // Proc. Natl. Acad. Sci. USA, 1991. V.88. P.189-193.
- Beaucage S.L., Caruthers M.H. Deoxynucleoside phosphoramidites - a new class of key intermediates for deoxypolynucleotide synthesis // Tetrahedron Lett. 1981 V.22. P.1859-1862.
- Bell D.C., Thomas W.K., Murtagh K.M., Dionne C.A., Graham A.C., Anderson J.E., Glover W.R. DNA base identification by electron microscopy // Microsc Microanal. 2012. V. 18. P. 1049-1053.
- Bing D.H., Boles C., Rehman F.N., Audeh M., Belmarsh M., Kelley B., Adams C.P. Bridge amplification: A solid phase PCR system for the amplification and detection of allelic differences in single copy genes // In: Genetic Identity Conference Proceeding, Seventh International Symposium on Human Identification. Promega Corporation. 1996.
- Brenchley R, Spannagl M, Pfeifer M, Barker GL, D'Amore R, Allen AM, McKenzie N, Kramer M, Kerhornou A, Bolser D, Kay S, Waite D, Trick M, Bancroft I, Gu Y, Huo N, Luo MC, Sehgal S, Gill B, Kianian S, Anderson O, Kersey P, Dvorak J, McCombie WR, Hall A, Mayer KF, Edwards KJ, Bevan MW, Hall N. Analysis of the bread wheat genome using whole-genome shotgun sequencing // Nature. 2012. V.491. P.705-710.
- Britten R.J., Kohne D.E. Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms // Science. 1968. V.161. P. 529- 540.
- Caruthers M.H. Gene synthesis machines: DNA chemistry and its uses // Science. 1985. V.230. P.281-285.
- Chargaff E. What really is DNA? Remarks on the changing aspects of a scientific concept // Prog. Nucl. Acid Res. Mol. Biol. (Davidson J.N., Cohn W.E., eds.) 1968. V.8. P.297-333.
- Church G.M., Gilbert W. Genomic sequencing // Proc. Natl. Acad. Sci. USA. 1984. V. 81. P. 1991- 1995.
- Clarke J., Wu H.C., Jayasinghe L., Patel A., Reid S., Bayley H. Continuous base identification for single-molecule nanopore DNA sequencing // Nat. Nanotechnol. 2009. V.4. P.265-270.
- Cohen SN, Chang AC, Boyer HW, Helling RB. Construction of biologically functional bacterial plasmids in vitro // Proc. Natl. Acad. Sci. USA. 1973. V.70. P.3240-3244.
- Compton J. Nucleic acid sequence-based amplification // Nature. - 1991. - V.350. - P.91-92.
- Crick F. On protein synthesis // Symp. Soc. Exp. Biol. 1958. V.12. P.138-163.
- Crick F.H. The origin of the genetic code // J. Mol. Biol. 1968. V.38. P.367-79.
- Crick F. Central dogma of molecular biology // Nature. 1970. V.227. P561-563.
- Crick F. Molecular biology in the year 2000 // Nature. 1970. V.228. P.613-615.
- Doelling J.H., Gaudino R.J., Pikaard C.S. Functional analysis of Arabidopsis thaliana rRNA gene and spacer promoters in vivo and by transient expression // Proc. Natl. Acad. Sci. USA. 1993. V.90. P.7528-7532.
- Drmanac, R., Labat, I., Brukner, I., Crkvenjakov, R. Sequencing of megabase plus DNA by hybridization: theory of the method // Genomics. 1989. V.4. P.114-1128.
- Duck P., Alvarado-Urbina G., Burdick B., Collier B. Probe amplifier system based on chimeric cycling oligonucleotides // BioTechniques. 1990. V. 9. P. 142-148.
- Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, Bibillo A, Bjornson K, Chaudhuri B, Christians F, Cicero R, Clark S, Dalal R, Dewinter A, Dixon J, Foquet M, Gaertner A, Hardenbol P, Heiner C, Hester K, Holden D, Kearns G, Kong X, Kuse R, Lacroix Y, Lin S, Lundquist P, Ma C, Marks P, Maxham M, Murphy D, Park I, Pham T, Phillips M, Roy J, Sebra R, Shen G, Sorenson J, Tomaney A, Travers K, Trulson M, Vieceli J, Wegener J, Wu D, Yang A, Zaccarin D, Zhao P, Zhong F, Korlach J, Turner S. Real-time DNA sequencing from single polymerase molecules // Science. 2009. V.323. P.133-138.
- Ertem G., Prabahar K.J., Joshi P.C., Ferris J.P. Bridging the prebiotic and RNA worlds: prebiotic RNA synthesis on clay // J. Biomolecular Structure and Dinavics. 2000. V. 11. P. 207-210.
- Esfandyarpour H., Davis R.W. An integrated differential nanocalimeter with on-chip microfluidic multiplexing for high throughput genomics and proteomics // 14th International Conference on Miniaturized Systems for Chemistry and Life Sciences, 3 - 7 October 2010, Groningen. P.1349- 1351.
- Esfandyarpour H., Zheng B., Pease R.F., Davis R.W. Structural optimization for heat detection of DNA thermosequencing platform using finite element analysis // Biomicrofluidics. 2008. V.2. P.24102.
- Fang G, Munera D, Friedman DI, Mandlik A, Chao MC, Banerjee O, Feng Z, Losic B, Mahajan MC, Jabado OJ, Deikus G, Clark TA, Luong K, Murray IA, Davis BM, Keren-Paz A, Chess A, Roberts RJ, Korlach J, Turner SW, Kumar V, Waldor MK, Schadt EE. Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing // Nat. Biotechnol. 2012. V.30. P.1232- 1239. Erratum in Nat. Biotechnol. 2013. V.31. P.566.
- Ferris J.P., Hill A.R. Jr., Liu R., Orgel L.E. Synthesis of long prebiotic oligomers on mineral surfaces // Nature. 1996. V. 381. P. 59-61.
- Feynman R.P. There's Plenty of Room at the Bottom: An Invitation to Enter a New Field of Physics // Engineering and Science (California Institute of Technology). 1960. V23. P.22-36.
- Fingerman I.M., Zhang X., Ratzat W., Husain N., Cohen R.F., Schuler G.D. NCBI Epigenomics: what's new for 2013 // Nucleic Acids Res. 2013. V.41 (Database issue). D221-225.
- Fleischmann R.D., Adams M.D., White O., Clayton R.A., Kirkness E.F., Kerlvage A.R., Bult C.J., Tomb J-F., Dougherty B.A., Merrick J.M., McKenney K., Sutton G., Fitz H.W., Fields C., Gocayne J.D., Scott J., Shirley R., Liu L-I., Glodek A., Kelley J.M., Weidman J.F., Phillips C.A., Spriggs T., Hedblom E., Cotton M.D., Utterback T.R., Hanna M.C., Nguyen D.T., Saudek D.M., Brandon R.C., Fine L.D., Fritchman J.L., Geoghagen N.S.M., Gnehm C.L., McDonald L.A., Small K.V., Fraser C.M., Smith H.O., Venter J.C. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd // Science. 1995. V.269. P.496-512.
- Flusberg B.A., Webster D.R., Lee J.H., Travers K.J., Olivares E.C., Clark T.A., Korlach J., Turner S.W. Direct detection of DNA methylation during single-molecule, real-time sequencing // Nat. Methods. 2010. V.7. P.461-465.
- Fraser C.M., Gocayne J.D., White O., Adams M.D., Clayton R.A., Fleischmann R.D., Bult C.J., Kerlavage A.R., Sutton G., Kelley J.M., Fritchman J.L., Weidman J.F., Small K.V., Sandusky M., Fuhrmann J., Nguyen D., Utterback T.R., Saudek D.M., Phillips C.A., Merrick J.M., Tomb J-F., Dougherty B.A., Bott K.F., Hu P-C., Lucier T.S., Peterson S.N., Smith H.O., Hutchinson C.A., III, Venter J.C. The minimal gene complement of Mycoplasma genitalium // Science. 1995. V.270. P.397-403.
- Frommer M., McDonald L.E., Millar D.S., Collis C.M., Watt F., Grigg G.W., Molloy P.L., Paul C.L. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands // Proc. Natl. Acad. Sci. USA. 1992. V.89. P.1827-1831.
- Gingeras T.R., Higuchi R., Kricka L.J., Lo Y.M., Wittwer C.T. Fifty years of molecular (DNA/RNA) diagnostics // Clin. Chem. - 2005. - V.51. - P.661-671.
- Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, Alkan C, Prüfer K, Meyer M, Burbano HA, Good JM, Schultz R, Aximu-Petri A, Butthof A, Höber B, Höffner B, Siegemund M, Weihmann A, Nusbaum C, Lander ES, Russ C, Novod N, Affourtit J, Egholm M, Verna C, Rudan P, Brajkovic D, Kucan Z, Gusic I, Doronichev VB, Golovanova LV, Lalueza-Fox C, de la Rasilla M, Fortea J, Rosas A, Schmitz RW, Johnson PL, Eichler EE, Falush D, Birney E, Mullikin JC, Slatkin M, Nielsen R, Kelso J, Lachmann M, Reich D, Pääbo S. A draft sequence of the Neandertal genome // Science. 2010. V.328. P.710-722.
- Guatelli J.C., Whitfield K.M., Kwoh D.Y., Barringer K.J., Richman D.D., Gingeras T.R. Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication // Proc. Natl. Acad. Sci. USA. - 1990. - V.87. - P.1874-1878. – Erratum - Guatelli J.C., Whitfield K.M., Kwoh D.Y., Barringer K.J., Richman D.D., Gingeras T.R. Isothermal, in vitro amplification of nucleic acids by a multienzyme reaction modeled after retroviral replication // Proc. Natl. Acad. Sci. USA. 1990. V.87. P.7797.
- Hall J.G., Eis P.S., Law S.M., Reynaldo L.P., Prudent J.R., Marshall D.J., Allawi H.T., Mast A.L., Dahlberg J.E., Kwiatkowski R.W., de Arruda M., Neri B.P., Lyamichev V.I. Sensitive detection of DNA polymorphisms by the serial invasive signal amplification reaction // Proc. Natl. Acad. Sci. USA. 2000. V. 97. P. 8272-8277.
- Higuchi R., Dollinger G., Walsh P.S., Griffith R. Simultaneous amplification and detection of specific DNA sequences // Biotechnology. 1992. V.10. P.413-417.
- Higuchi R., Fockler C., Dollinger G., Watson R. Kinetic PCR analysis: real-time monitoring of DNA amplification reactions // Biotechnology. 1993. V.11. P.1026-1030.
- Horii T., Monji A., Uemura K., Nagura O. Rapid detection of fluoroquinolone resistance by isothermal chimeric primer-initiated amplification of nucleic acids from clinical isolates of Neisseria gonorrhoeae // J. Microbiol. Methods. 2006. V. 65. P. 557-561.
- Hotchkiss R.D. The quantitative separation of purines, pyrimidines, and nucleosides by paper chromatography // J. Biol. Chem. 1948. V. 175. P. 315-332.
- Hunkapiller M., Kent S., Caruthers M., Dreyer W., Firca J., Giffin C., Horvath S., Hunkapiller T., Tempst P., Hood L. A microchemical facility for the analysis and synthesis of genes and proteins // Nature. 1984. V.310. P.105-111.
- Hyman E.D. A new method of sequencing DNA // Anal. Biochem. 1988. V.174. P.423-436.
- Jackson D.A., Symons R.H., Berg P. Biochemical method for inserting new genetic information into DNA of Simian Virus 40: circular SV40 DNA molecules containing lambda phage genes and the galactose operon of Escherichia coli // Proc. Natl. Acad. Sci. USA. 1972. V.69. P.2904- 2909.
- Johnson T.B., Coghill R.D. Researches on pyrimidines. C111. The discovery of 5-methylcytosine in tuberculinic acid, the nucleic acid of the tubercle bacillus // J. Biol. Chem. 1925. V.47. P.2838-2844.
- Kafatos F.C., Jones C.W., Efstratiadis A. Determination of nucleic acid sequence homologies and relative concentrations by a dot hybridization procedure // Nucleic Acids Res. 1979. V.7. P.1541- 1552.
- Kasianowicz J.J., Brandin E., Branton D., Deamer D.W. Characterization of individual polynucleotide molecules using a membrane channel // Proc. Natl. Acad. Sci. USA. 1996. V.93. P.13770- 13773.
- Kleppe K., Ohtsuka E., Kleppe R., Molineux I., Khorana H.G. Studies on polynucleotides. XCVI. Repair replications of short synthetic DNA's as catalyzed by DNA polymerases // J. Mol. Biol. 1971. V.56. P.341-361.
- Koop M.U., Mello A.J., Manz A. Chemical amplification: continuous-flow PCR on a chip // Science. 1998. V.280. P.1046-1048.
- Kurn N., Chen P., Heath J.D., Kopf-Sill A., Stephens K.M., Wang S. Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications // Clin. Chem. 2005. V.51. P.1973-1981.
- Kwoh D.Y., Davis G.R., Whitfield K.M., Chappelle H.L., DiMichele L.J., Gingeras T.R. Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format // Proc. Natl. Acad. Sci. USA. 1989. V.86. P.1173-1177.
- Lander E.S., Linton L.M., Birren B., и еще более 300 авторов - International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome // Nature. 2001. V.409. P.860-921.
- Lee L.G., Connell C.R., Bloch W. Allelic discrimination by nick-translation PCR with fluorogenic probes // Nucl. Acids Res. 1993. V. 21. P. 3761-3766.
- Lenski R.E., Ofria C., Collier T.C., Adami C. Genome Complexity, Robustness, and Genetic Interactions in Digital Organisms // Nature. 1999. V.400. P.661-664.
- Lenski R.E., Ofria C., Pennock R.T., Adami C. The Evolutionary Origin of Complex Features // Nature. 2003. V.423. P.139-145.
- LeProust E.M., Peck B.J., Spirin K., McCuen H.B., Moore B., Namsaraev E., Caruthers M.H. Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process // Nucleic Acids Res. 2010. V.38. P.2522- 2540.
- Ling HQ, Zhao S, Liu D, Wang J, Sun H, Zhang C, Fan H, Li D, Dong L, Tao Y, Gao C, Wu H, Li Y, Cui Y, Guo X, Zheng S, Wang B, Yu K, Liang Q, Yang W, Lou X, Chen J, Feng M, Jian J, Zhang X, Luo G, Jiang Y, Liu J, Wang Z, Sha Y, Zhang B, Wu H, Tang D, Shen Q, Xue P, Zou S, Wang X, Liu X, Wang F, Yang Y, An X, Dong Z, Zhang K, Zhang X, Luo MC, Dvorak J, Tong Y, Wang J, Yang H, Li Z, Wang D, Zhang A, Wang J. Draft genome of the wheat A-genome progenitor Triticum urartu // Nature. 2013. V.496. P.87-90.
- Liu G.E., Bickhart D.M. Copy number variation in the cattle genome // Funct. Integr. Genomics. 2012. V.12. P609-624.
- Lizardi P.M., Huang X., Zhu Z., Bray-Ward P., Thomas D.C., Ward D.C. Mutation detection and single-molecule counting using isothermal rollingcircle amplification // Nat. Genet. 1998. V.19. P. 225-232.
- Luckey J.A., Drossman H., Kostichka A.J., Mead D.A., D'Cunha J., Norris T.B., Smith L.M. High speed DNA sequencing by capillary electrophoresis // Nucl. Acids Res. 1990. V.18. P.4417-4421.
- Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KF, Sehgal SK, Li W, Gill BS, Bevan MW, Simková H, Dolezel J, Weining S, Lazo GR, Anderson OD, Dvorak J. A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor // Proc. Natl. Acad. Sci. USA. 2013. V.110. P.7940-7945.
- Lyamichev V.I., Kaiser M.W., Lyamicheva N.E., Vologodskii A.V., Hall J.G., Ma W.P., Allawi H.T., Neri B.P. Experimental and theoretical analysis of the invasive signal amplification reaction // Biochemistry. 2000. V. 39. P. 9523-9532.
- Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM. Genome sequencing in microfabricated high-density picolitre reactors // Nature. 2005. V.437. P.376-380.
- Matteucci M.D., Caruthers M.H. Studies on nucleotide chemistry IV. Synthesis of deoxyoligonucleotides on a polymer support // J. Amer. Chem. Soc. 1981. V.103 P.3185-3191.
- Maxam A.M., Gilbert W. A new method for sequencing DNA // Proc. Natl. Acad. Sci. USA. 1977. V.74. P.560-564.
- McKusick V.A., Ruddle F.H. A new discipline, a new name, a new journal // Genomics, 1987, V.1, P.1-2.
- Michelson A.M., Todd A.R. Nucleotides part XXXII. Synthesis of a dithymidine dinucleotide containing a 3′: 5′-internucleotidic linkage // J. Chem. Soc. 1955. P.2632-2638. DOI: 10.1039/JR9550002632
- Moore G.E. Cramming more components onto integrated circuits // Electronics. 1965. V. 38. P. 114- 117.
- Mukai H., Uemori T., Takeda O., Kobayashi E., Yamamoto J., Nishiwaki K., Enoki T., Sagawa H., Asada K., Kato I. Highly efficient isothermal DNA amplification system using three elements of 5'- DNA-RNA-3' chimeric primers, RNaseH and stranddisplacing DNA polymerase // J.Biochem. 2007. V. 142. P. 273-281.
- Mullis K.B. The unusual origin of the polymerase chain reaction // Sci. Am. 1990. V.262. P.56-61, 64- 65.
- Mullis K.B., Faloona F.A. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction // Methods Enzymol. 1987. V.155. P.335- 350.
- Nakano H., Matsuda K., Yohda M., Nagamune T., Endo I., Yamane T. High speed polymerase chain reaction in constant flow // Biosci. Biotech. Biochem. 1994. V.58. P.349-352.
- Nakano M., Komatsu J., Matsuura S., Takashima K., Katsura S., Mizuno A. Single-molecule PCR using water-in-oil emulsion // J. Biotechnol. 2003. V.102. P.117-124.
- Navashin M. "Amphiplastie" - eine neue Karyologische Erscheinung // Ztschr. ind. Abst. und Verebungslehre. - 1928. - V.2. - Suppl. - S.1148- 1152. (русский перевод — М.С. Навашин "Амфипластия" - новое кариологическое явление // В кн.: Проблемы кариологии и цитогенетики в исследованиях на видах рода Crepis. - М.: Наука. 1985. С.108-111.)
- Northrup M.A., Ching M.T., White R.M., Watson R.T. DNA amplification with a microfabricated reaction chamber / In Transducers'93: The 7th International Conference on Solid-State Sensors and Actuators. June 7-10, 1993, Yokohama, Japan. 1993. P. 924-926. [цит. по Daniel J.H., Iqbal S., Millington R.B., Moore D.F., Lowe C.R., Leslie D.L., Lee M.A., Pearce M.J. Silicon microchambers for DNA amplification // Sensors and Actuators A. 1998. V. 71. P. 81-88].
- Notomi T., Okayama H., Masubuchi H., Yonekawa T., Watanabe K., Amino N., Hase T. Loop-mediated isothermal amplification of DNA // Nucleic Acids Res. 2000. V. 28. E63.
- Nyren P., Lundin A. Enzymatic method for continuous monitoring of inorganic pyrophosphate synthesis // Anal. Biochem. 1985. V.151. P.504-509.
- Oberholzer T., Albrizio M., Luisi P.L. Polymerase chain reaction in liposomes // Chem Biol. 1995. V.2. P.677-682.
- Orgel L.E. Evolution of the genetic apparatus // J. Mol. Biol. 1968. V.38. P.381-93.
- Reeder R.H. Mechanisms of nucleolar dominance in animals and plants // J. Cell. Biol. 1985. V.101. P.2013-2016.
- Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, Davey M, Leamon JH, Johnson K, Milgrew MJ, Edwards M, Hoon J, Simons JF, Marran D, Myers JW, Davidson JF, Branting A, Nobile JR, Puc BP, Light D, Clark TA, Huber M, Branciforte JT, Stoner IB, Cawley SE, Lyons M, Fu Y, Homer N, Sedova M, Miao X, Reed B, Sabina J, Feierstein E, Schorn M, Alanjary M, Dimalanta E, Dressman D, Kasinskas R, Sokolsky T, Fidanza JA, Namsaraev E, McKernan KJ, Williams A, Roth GT, Bustillo J. An integrated semiconductor device enabling non-optical genome sequencing // Nature. 2011. V.475. P.348-352.
- Saiki R.K., Gelfand D.H., Stoffel S., Scharf S., Higuchi R., Horn G.T., Mullis K.B., Erlich H.A. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase // Science. 1988. V.239. P.487-491.
- Saiki, R.K., Scharf, S., Faloona, F., Mullis, K.B., Horn, G.T., Erlich, H.A., Arnheim, N. Enzymatic amplification of b-globin genomic sequences and restriction site analysis for diagnosis of sicle cell anemia // Ibid. 1985. V.230. P.1350- 1354.
- Sakurai T., Husimi Y. Real-time monitoring of DNA polymerase reactions by a micro ISFET pH sensor // Anal Chem. 1992. V.64. P.1996-1997.
- Saluz H., Jost J.P. Optimized genomic sequencing as a tool for the study of cytosine methylation in the regulatory region of the chicken vitellogenin II gene // Gene. 1986. V.42. P.151-157. 115. Sanger, F., Coulson, A.R., Hong, G.F., Hill, D.F., Petersen, G.B. Nucleotide sequence of bacteriophage l DNA // J. Mol. Biol. 1982. V.162. P.729-773. 116. Sanger F., Nicklen S., Coulson A.R. DNA sequencing with chain-terminating inhibitors // Proc. Natl. Acad. Sci. USA. 1977. V.74. P.5463-7. 117. Sano T., Smith C., Cantor C.R. Immuno-PCR: very sensitive antigen detection by means of specific antibody-DNA conjugates // Science. 1992. V.258. P.120-122. 118. Sealey P.G., Southern E.M. Gel electrophoresis of DNA // In: Gel Electrophoresis of Nucleic Acids. A practical approach. IRL Press. Oxford, 1982. - P.39-76.
- Smith D.R., Doucette-Stamm L.A., Deloughery C., Lee H., Dubois J., Aldredge T., Bashirzadeh R., Blakely D., Cook R., Gilbert K., Harrison D., Hoang L., Keagle P., Lumm W., Pothier B., Qiu D., Spadafora R., Vicaire R., Wang Y., Wierzbowski J., Gibson R., Jiwani N., Caruso A., Bush D., Safer H., Patwell D., Prabhakar S., McDougall S., Shimer G., Goyal A., Pietrokovski S., Church G.M., Daniels C.J., Mao J-I., Rice P., Nolling J., Reeve J.N. Complete genome sequence of Methanobacterium thermoautrophicum DH: Functional analysis and comparative genomics // J. Bacteriol. 1997. V.179. P.7135-7155.
- Smith L.M., Sanders J.Z., Kaiser R.J., Hughes P., Dodd C., Connel C.R., Heiner C., Kent S.B.H., Hood L.E. Fluorescence detection in automated DNA sequence analysis // Nature. 1986. V.321. P.674-679.
- Southern E.M. Detection of specific sequences among DNA fragments separated by gel electrophoresis // J. Mol. Biol. 1975. V.98. P.503- 517.
- Southern E.M., Maskos U., Elder J.K. Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: evaluation using experimental models // Genomics. 1992. V.13. P. 1008-1017.
- Tabor S., Richardson C.C. Selective oxidation of the exonuclease domain of bacteriophage T7 DNA polymerase // J. Biol. Chem. 1987a. V.262. P.15330- 15333.
- Tabor S., Richardson C.C. Selective inactivation of the exonuclease activity of bacteriophage T7 DNA polymerase by in vitro mutagenesis // J. Biol. Chem. 1989. V.264. P.6447-6458.
- Tanaka H., Kawai T. Partial sequencing of a single DNA molecule with a scanning tunnelling microscope // Nature Nanotechnol. 2009. V.4. P.518- 522.
- Thomas W.K, Glover W. Direct sequencing by TEM of Z-substituted DNA molecules / Next Generation Genome Sequencing: Towards Personalized Medicine. M.Janitz (ed.). 2008. P.103- 116.
- Uemori T., Mukai H., Takeda O., Moriyama M., Sato Y., Hokazono S., Takatsu N., Asada K., Kato I. Investigation of the molecular mechanism of ICAN, a novel gene amplification method // J.Biochem. 2007. V.142. P.283-292.
- Urdea M., Running J., Horn T., Clyne J., Ku L.L., Warner B.D. A novel method for the rapid detection of specific nucleotide sequences in crude biological samples without blotting or radioactivity; application to the analysis of hepatitis B virus in human serum // Gene. 1987. V. 61. P. 253-264.
- Vanyushin B.F., Tkacheva S.G., Belozersky A.N. Rare bases in animal DNA // Nature. 1970. V. 225. P. 948-949.
- Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, WinnDeen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigó R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X. The sequence of the human genome // Science. 2001. V.291. P.1304-1351. Erratum in: Science. 2001. V.292. P.1838.
- Vischer E., Chargaff E. Studies on the composition of nucleic acids // Fed Proc. 1948. V. 7. P. 197.
- Vogelstein B., Kinzler K.W. Digital PCR // Proc. Natl. Acad.Sci. USA. 1999. V. 96. P. 9236-9241.
- Waddington C.H. The epigenotype // Endeavour. 1942. 1. P.18-20. (перепечатка - Waddington C.H. The epigenotype // Intern. J. Epidemiol. 2012. V.41. P.10-13.)
- Walker G.T., Fraiser M.S., Schram J.L., Little M.C., Nadeau J.G., Malinowski D.P. Strand displacement amplification--an isothermal, in vitro DNA amplification technique // Nucleic Acids Res. 1992. V. 20. P.1691-1696.
- Walker G.T., Little M.C., Nadeau J.G., Shank D.D. Isothermal in vitro amplification of DNA by a restriction enzyme/DNA polymerase system // Proc. Natl. Acad. Sci. USA. 1992а. V. 89. P. 392-396.
- Wang J, Wang W, Li R, Li Y, Tian G, Goodman L, Fan W, Zhang J, Li J, Zhang J, Guo Y, Feng B, Li H, Lu Y, Fang X, Liang H, Du Z, Li D, Zhao Y, Hu Y, Yang Z, Zheng H, Hellmann I, Inouye M, Pool J, Yi X, Zhao J, Duan J, Zhou Y, Qin J, Ma L, Li G, Yang Z, Zhang G, Yang B, Yu C, Liang F, Li W, Li S, Li D, Ni P, Ruan J, Li Q, Zhu H, Liu D, Lu Z, Li N, Guo G, Zhang J, Ye J, Fang L, Hao Q, Chen Q, Liang Y, Su Y, San A, Ping C, Yang S, Chen F, Li L, Zhou K, Zheng H, Ren Y, Yang L, Gao Y, Yang G, Li Z, Feng X, Kristiansen K, Wong GK, Nielsen R, Durbin R, Bolund L, Zhang X, Li S, Yang H, Wang J. The diploid genome sequence of an Asian individual // Nature. 2008. V.456. P.60-65.
- Watson J.D., Crick F.H.C. A structure for deoxyribose nucleic acid // Nature. 1953. V.171. P.737-738.
- Watson J.D., Crick F.H.C. Genetic implication of the structure of deoxyribonucleic acid // Nature. 1953a. V.171. P.964-967.
- Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM. The complete genome of an individual by massively parallel DNA sequencing // Nature. 2008. V.452. P.872-876.
- Westerhoff H.V. Systems biology left and right // Methods Enzymol. 2011. V. 500:P. 3-11. 141. Westerhoff H.V., Palsson B.O. The evolution of molecular biology into systems biology // Nat Biotechnol. 2004. V. 22. P. 1249-1252.
- Wu D.Y., Wallace R.B. The ligation amplification reaction (LAR)--amplification of specific DNA sequences using sequential rounds of template-dependent ligation // Genomics. 1989. V.4. P.560-569.
- Yang J.Q., Tata P.V., Park-Turkel H.S., Waksal H.W. The application of AmpliProbe in diagnostics // Biotechniques. 1991. V. 11. P. 392-397.
- Yoshida K. A highly simplified horizontal electrophoretic apparatus including a handmade power supply and its application // Anal Biochem. 1983. V. 130. P. 246-259.Zhang D.Y., Brandwein M., Hsuih T.C., Li H. Amplification of targetspecific, ligation-dependent circular probe // Gene. 1998. V.211. P.277-285.
- Zimnitskii A.N. (2012). Concept of Template Synthesis of Proteoglycans, The Complex World of Polysaccharides, Dr. Desiree Nedra Karunaratne (Ed.), ISBN: 978-953-51-0819-1, InTech, DOI: 10.5772/48085. Available from: http://www.intechopen.com/books/the-complexworld-of-polysaccharides/concept-of-templatesynthesis-of-proteoglycans